Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48800 120 / 1e-31 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G23680 114 / 3e-29 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G45700 47 / 1e-05 sterile alpha motif (SAM) domain-containing protein (.1) AT3G07170 42 / 0.0003 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016718 [exp] 454 / 2e-161 AT5G23680 173 / 6e-52 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10021086 [exp] 53 / 2e-07 AT3G11890 100 / 2e-23 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10017225 [exp] 52 / 2e-07 AT3G11890 101 / 9e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10038078 [exp] 47 / 2e-05 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 45 / 5e-05 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104700 [exp] 193 / 5e-59 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.015G104000 [exp] 121 / 8e-32 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G164600 [exp] 113 / 5e-29 AT3G48800 133 / 5e-37 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G062800 [exp] 112 / 2e-28 AT3G48800 136 / 8e-38 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G218300 [exp] 52 / 2e-07 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G198500 [exp] 44 / 6e-05 AT3G11890 108 / 6e-27 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.014G190800 [exp] 41 / 0.0004 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10036012 pacid=23141181 polypeptide=Lus10036012 locus=Lus10036012.g ID=Lus10036012.BGIv1.0 annot-version=v1.0 ATGGCAGATACCCCCCCGCCGGAACTCCATCTTGTGGGCGGCGTGGTGGCTTCCGTTATCCCTCCTCCTACTGCTGCTGCTGGGGTTTCTAACCAAGTGA CCTCGTCGGAAACCGTGGGGTCGAAGCGGCAAAGGAGGCCCAGTGTCCGGCTTGGCGATATCGGCGGCGATAGTCTCTACGATCCCTATTCCCGGAAGTC TATTGGTGGAACGAGTGGTAGTAGCAAGCAATGGAAACAGCAAGTAGTGGATCAGAAGCATAAAGATTCTTCAAGCAAGGCTGCTGCCGCGTCCAAGACC AGGGCTCTCACGGACTATACTACTGAAACCCTAGACGAGGGCAGCAAGGAATTGAATCTGGAAAAAATCACAATTGGGAGCTGGAGAGTCAAAGACACCA AGAAGCGAGCCCCAATTCCCACCGCCAAGCGCGTCAGATCCAGTTGGGTGACCAAGGTTGAAGAAGAAGAAGGTGGTGGTAACAACAATGTTGAAGGGGA TTTCGACAGCGAAGAAGGCATGGACGATGATGATGGTGATGAGAATTCAGAAGATACTCCTTCCAAAGAAGATAGGCATGAGAATTTGGGGGACGGGAAT GAGAGAAACGAGAGGGAAATGTACTATAACAACAACAACAACAACCACAAGAAGAGGAGTAGTGTTAAGTCAAGAAGCGGTGATCATCATCATCAAGATG GAGTTGAATTGTTGTCAGTCCCTTCGGAAACGGACACTAGAGGAGGAGGAGGAAGAGGGTACAGGGAGAATAATAATAATAATGAGGTAATGTGTGGTGC AGGAGAAGATGGTGTGAGGATTTGGCTAGATAACTTGGGGTTAGGACGTTATGCTCCTGTTTTTGAAATACATGAGGTGGATGATGAAGTGTTGCCTATG CTGACGTTGGAAGATTTGAAAGATATGGGGATTAATGCAGTTGGCTCCAGAAGGAAGATGTTTGCTGCAATTCAGAAGCTCAATAAAGGGTTTTCTTGA
AA sequence Show only first row Show all	>Lus10036012 pacid=23141181 polypeptide=Lus10036012 locus=Lus10036012.g ID=Lus10036012.BGIv1.0 annot-version=v1.0 MADTPPPELHLVGGVVASVIPPPTAAAGVSNQVTSSETVGSKRQRRPSVRLGDIGGDSLYDPYSRKSIGGTSGSSKQWKQQVVDQKHKDSSSKAAAASKT RALTDYTTETLDEGSKELNLEKITIGSWRVKDTKKRAPIPTAKRVRSSWVTKVEEEEGGGNNNVEGDFDSEEGMDDDDGDENSEDTPSKEDRHENLGDGN ERNEREMYYNNNNNNHKKRSSVKSRSGDHHHQDGVELLSVPSETDTRGGGGRGYRENNNNNEVMCGAGEDGVRIWLDNLGLGRYAPVFEIHEVDDEVLPM LTLEDLKDMGINAVGSRRKMFAAIQKLNKGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	0	1
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	2.4	0.7878
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	3.9	0.7732
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	6.9	0.7748
AT1G71730			unknown protein		Lus10042772 [exp]	7.5	0.7473
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10038782 [exp]	8.1	0.7431
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10023609 [exp]	8.1	0.6899
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	8.2	0.7637
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	9.2	0.7571
AT3G63390			unknown protein		Lus10024829 [exp]	9.5	0.7466
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	12.2	0.7090

Compare expression of checked genes

Lus10036012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.