Plant FIBer expression Database

Lus10036013 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23690 597 / 0 Polynucleotide adenylyltransferase family protein (.1)
AT3G48830 546 / 0 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (.1)
AT1G28090 491 / 6e-171 Polynucleotide adenylyltransferase family protein (.1.2.3)
AT2G17580 297 / 4e-92 Polynucleotide adenylyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016719
[exp]
979 / 0 AT5G23690 635 / 0.0 Polynucleotide adenylyltransferase family protein (.1)
Lus10016699
[exp]
316 / 1e-99 AT2G17580 453 / 1e-149 Polynucleotide adenylyltransferase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G105000
[exp]
682 / 0 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1)
Potri.015G104300
[exp]
671 / 0 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1)
Potri.003G164400
[exp]
571 / 0 AT1G28090 569 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2.3)
Potri.005G100100
[exp]
319 / 1e-99 AT2G17580 459 / 4e-150 Polynucleotide adenylyltransferase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0260 NTP_transf PF01743 PolyA_pol Poly A polymerase head domain
Representative CDS sequence
>Lus10036013 pacid=23141119 polypeptide=Lus10036013 locus=Lus10036013.g ID=Lus10036013.BGIv1.0 annot-version=v1.0
ATGGCGATTTCTGGTTTTGGTTTTGCCCGTAGACCTCATATCCCTTTCTGCCCACAAATGTTCCACTGCGTTCGCAAAGCTAGATATAGTGCTGTTGCGG
CTGTTGAGATGCTTGACGAGCGCACCAATTACAGCTCAGGGCGCCAAGTGGAAGGTGGGAAAAAGGTCTCAGATTGGAAGAAGCTCAACTCCAAGGAACT
CGGAATTAGCACCTCTATGATTTCCAAGCCTACCAGGAAAGTTCTCAATGTTCTCAAGAAAAGAGGGTATGAGGTTTATCTTGTTGGTGGCTGTGTTCGT
GATCTTATCCTGAAGCGGACACCAAAGGACTTTGACATAATAACATCAGCACAACTTAAAGAGGTAGTAAGGGCCTTCTCATGGTGCGTCATTGTTGGCC
GAAGGTTCCCTATCTGTCATGTTCATATTGATGGCGTTATATTGGAAGTTTCAAGTTTTAGTACCACTGGACCTCAACTTCATGGCCGTCACAACTATGA
TTTCTGGAACCCTGCTGACTGCGAGCACAAGGATTTTATACGTTGGAGAAATTGCATGCGACGTGATTTCACAATCAACGGGTTGATGTTTGATCCGTAT
GCGAGAATTGTGTATGATTACACGGGAGGTCTGGAAGATATTCGAAAGGCTAAAGTGCGGACTGTGATTCCTGCAAGTAATTCTTTTCAGGAAGATTGTG
CTCGGATTCTGCGAGCAGTCAGGATTGCTGCTCGCCTAGGATTTCGTTTCTCTCAGGATACAGCTCGTTTTATTAAAAATTTATCGGGCTCAATTTTAAG
GCTTGATAAGACAAGGATTATGATGGAAATGAATTACATGCTAGCATATGGTTCTGCTGAAGCTTCTTTGCGGCTTTTATGGAAATTTGGACTTCTTGAA
ATTCTTCTGCCAATTCAGGCGGCATACTTTGTTCAAAATGGTTTTAAGAGACGTGATACGAGATCTAATATGCTGTTGTCATTGTTTTCCAACTTGGATA
AACTCCTTGCACCTGACAAACCATGCCATAGTAGTTTGTGGGTTGGAATATTAGCCTTTCACAAGGCGATATCGGAGCAACCGAGGAATCCAATGATAGT
TGCTACCTTTTGTCTTGCTGTTCACAGTGGGGGAGATGTGTCAAAAGCAGTGAAGATAGCAAAGAGTATCGGCAAGCAACATGATAAAAGCTATCATGAA
CTATCAGAAGAAGCTGTTGGTCTGGATTCGAGGGTATTGATTAACGAGGTTAAGGATCTTGCAGCATGTGTTGAACAGGAGCTATCTCTTATGACTGACG
AGTATTATGTATCAAAAGCCATGGCGAAGTATCCTAAAGCTCCGTACTCGGATCTGGTGTTCATTCCACTGCAATTGTATCTAAGTGCGAGGAAGATGTT
TGAGTGTGTAAGAGGAGGGGCAGAAAGAGGGTATTCGGGGAAACAAGGTAAGAGGAGGAGAAGGATAAATCACGAATTACTAAGCGCGGGAAACTTGGAA
GAAGTTAGGCATACATTTGCAAGAGTTGTCTTTGATACCCTTTACCCTCTCGACCAATCCGACTGA
AA sequence
>Lus10036013 pacid=23141119 polypeptide=Lus10036013 locus=Lus10036013.g ID=Lus10036013.BGIv1.0 annot-version=v1.0
MAISGFGFARRPHIPFCPQMFHCVRKARYSAVAAVEMLDERTNYSSGRQVEGGKKVSDWKKLNSKELGISTSMISKPTRKVLNVLKKRGYEVYLVGGCVR
DLILKRTPKDFDIITSAQLKEVVRAFSWCVIVGRRFPICHVHIDGVILEVSSFSTTGPQLHGRHNYDFWNPADCEHKDFIRWRNCMRRDFTINGLMFDPY
ARIVYDYTGGLEDIRKAKVRTVIPASNSFQEDCARILRAVRIAARLGFRFSQDTARFIKNLSGSILRLDKTRIMMEMNYMLAYGSAEASLRLLWKFGLLE
ILLPIQAAYFVQNGFKRRDTRSNMLLSLFSNLDKLLAPDKPCHSSLWVGILAFHKAISEQPRNPMIVATFCLAVHSGGDVSKAVKIAKSIGKQHDKSYHE
LSEEAVGLDSRVLINEVKDLAACVEQELSLMTDEYYVSKAMAKYPKAPYSDLVFIPLQLYLSARKMFECVRGGAERGYSGKQGKRRRRINHELLSAGNLE
EVRHTFARVVFDTLYPLDQSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G23690 Polynucleotide adenylyltransfe... Lus10036013
[exp]
0 1
AT5G23690 Polynucleotide adenylyltransfe... Lus10016719
[exp]
1.0 0.9573
AT4G31210 DNA topoisomerase, type IA, co... Lus10026990
[exp]
2.4 0.9324
AT5G26880 AGL26 AGAMOUS-like 26 (.1.2) Lus10015701
[exp]
4.5 0.9083
AT3G13180 NOL1/NOP2/sun family protein /... Lus10016622
[exp]
6.0 0.8979
AT5G38360 alpha/beta-Hydrolases superfam... Lus10009166
[exp]
8.8 0.9184
AT3G13490 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS ... Lus10013408
[exp]
10.4 0.9039
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Lus10036417
[exp]
11.8 0.9027
AT1G30680 toprim domain-containing prote... Lus10023380
[exp]
13.6 0.9141
AT5G10620 methyltransferases (.1) Lus10020175
[exp]
15.0 0.8872
AT1G30680 toprim domain-containing prote... Lus10038433
[exp]
17.4 0.8583

Lus10036013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.