Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 517 / 0 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 468 / 6e-166 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 286 / 2e-95 PHT3;3 phosphate transporter 3;3 (.1) AT1G79900 63 / 5e-11 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 62 / 2e-10 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G32400 61 / 4e-10 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G53940 61 / 6e-10 Mitochondrial substrate carrier family protein (.1) AT2G37890 59 / 2e-09 Mitochondrial substrate carrier family protein (.1) AT5G66380 58 / 2e-09 ATFOLT1 folate transporter 1 (.1) AT5G51050 58 / 5e-09 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016720 [exp] 622 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10041519 [exp] 520 / 0 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 517 / 0 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10026554 [exp] 287 / 5e-95 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 284 / 8e-94 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 255 / 2e-80 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10033947 [exp] 68 / 2e-12 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 67 / 5e-12 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 66 / 7e-12 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322300 [exp] 529 / 0 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.017G060800 [exp] 522 / 0 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 522 / 0 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 502 / 1e-179 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 303 / 8e-102 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 276 / 2e-91 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.006G099800 [exp] 69 / 7e-13 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.016G115400 [exp] 67 / 3e-12 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.010G165900 [exp] 64 / 2e-11 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 64 / 4e-11 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10036014 pacid=23141002 polypeptide=Lus10036014 locus=Lus10036014.g ID=Lus10036014.BGIv1.0 annot-version=v1.0 ATGGCTGTCTCCGATCATCATCGCCATTCTCTGATCCCGAACTTCCTCTACTCTTCCACGGCCGTTTTTCATTCGGATCCGTCCGCCGTCTATGGACTGC AACAATCTTGTCCGTCCGTCGTCGTTTCGCCGTCCAAGAGCTTCTCAATTCCGTCACCGAGCGAGAAGATACAGATGTACTCTCCCGCTTTCTACGCTGC CTGTACGGCCGGTGGTATCCTCAGCTGCGGCCTCACTCACATGACCGTCACTCCTCTAGATCTTGTCAAGTGCAATATGCAGATTAACCCAGCAAAGTAC AAGAGCATTTCATCTGGATTCGGAGTACTGCTGAAAGAACAAGGGGCGAAAGGTTTCTTCAGGGGATGGGTTCCTACATTGCTTGGTTACAGTGCTCAAG GGGCCTGCAAATTCGGGTTCTACGAGTTCTTCAAAAAGTACTACTCCGACATTGCCGGTCCTGAATTTGCCACCAAGTACAAGACATTGATTTACCTTGC TGGGTCTGCTTCTGCTGAAGTGATTGCTGATATCGCCCTCTGCCCCCTAGAGGCAGTTAAGGTTCGTGTCCAAACTCAGCCTGGGTTTGCCCGAGGTTTA TCTGATGGATTCCCCAAGTTTGTCAAAGCTGAAGGTTATGCTGGATTATACAAAGGGCTTGTTCCTCTTTGGGGACGGCAGATTCCATACACAATGATGA AATTCGCATCTTTTGAGACAATTGTGGAGCTAATATACAAGCACGCAATCCCAAGGCCGAAGGCAGAATGCAGTAAAAACTTGCAGCTTGGGGTGAGCTT TGCTGGCGGATACATCGCAGGTGTATTCTGTGCTATAGTGTCGCACCCAGCAGACAATCTGGTTTCTTTCCTTAACAACGCCAAGGGAGCTACTGCTGGT GATGCTGTTAAACAACTAGGTTTATGGGGTCTTTTTACCCGTGGTCTTCCTCTCCGAATCGTCATGATCGGAACCCTGACAGGAGCTCAATGGGGCATCT ACGATGCCTTCAAAGTCTTTGTGGGACTGCCGACTACTGGTGGAGCTGCTCCTCCGCCTGCTGCTGCCATAAAGAATTGA
AA sequence Show only first row Show all	>Lus10036014 pacid=23141002 polypeptide=Lus10036014 locus=Lus10036014.g ID=Lus10036014.BGIv1.0 annot-version=v1.0 MAVSDHHRHSLIPNFLYSSTAVFHSDPSAVYGLQQSCPSVVVSPSKSFSIPSPSEKIQMYSPAFYAACTAGGILSCGLTHMTVTPLDLVKCNMQINPAKY KSISSGFGVLLKEQGAKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEFATKYKTLIYLAGSASAEVIADIALCPLEAVKVRVQTQPGFARGL SDGFPKFVKAEGYAGLYKGLVPLWGRQIPYTMMKFASFETIVELIYKHAIPRPKAECSKNLQLGVSFAGGYIAGVFCAIVSHPADNLVSFLNNAKGATAG DAVKQLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPPPAAAIKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	0	1
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10011185 [exp]	1.4	0.9871
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	2.4	0.9869
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	2.8	0.9876
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	3.5	0.9867
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	3.7	0.9845
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	3.9	0.9855
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	8.7	0.9731
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10041702 [exp]	9.9	0.9697
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	10.6	0.9774
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	10.8	0.9823

Compare expression of checked genes

Lus10036014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.