Plant FIBer expression Database

Lus10036015 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48860 617 / 0 unknown protein
AT5G23700 553 / 0 unknown protein
AT5G13260 476 / 9e-164 unknown protein
AT4G25070 435 / 2e-144 unknown protein
AT4G08630 327 / 3e-102 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016721
[exp]
930 / 0 AT3G48860 674 / 0.0 unknown protein
Lus10043194
[exp]
823 / 0 AT3G48860 684 / 0.0 unknown protein
Lus10032546
[exp]
740 / 0 AT3G48860 595 / 0.0 unknown protein
Lus10001801
[exp]
522 / 0 AT5G13260 591 / 0.0 unknown protein
Lus10002574
[exp]
496 / 8e-171 AT5G13260 566 / 0.0 unknown protein
Lus10001720
[exp]
318 / 1e-99 AT4G08630 471 / 5e-155 unknown protein
Lus10004138
[exp]
295 / 8e-91 AT4G08630 464 / 2e-152 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G105400
[exp]
692 / 0 AT3G48860 546 / 0.0 unknown protein
Potri.015G104600
[exp]
611 / 0 AT3G48860 452 / 3e-153 unknown protein
Potri.003G164100
[exp]
573 / 0 AT5G13260 529 / 0.0 unknown protein
Potri.001G065800
[exp]
566 / 0 AT3G48860 528 / 0.0 unknown protein
Potri.005G044600
[exp]
415 / 2e-137 AT4G08630 436 / 5e-142 unknown protein
PFAM info
Representative CDS sequence
>Lus10036015 pacid=23141025 polypeptide=Lus10036015 locus=Lus10036015.g ID=Lus10036015.BGIv1.0 annot-version=v1.0
ATGGATCGGAGGAGGGCCGGAAGTCCGGTCTACGGTCGGCAGTGGAGTGGAGGATCGAGCAGCACAGGGTCTTCCTCTCCAGCCATGTCACCAGCGCATC
CCAGCTCCAGGCTCGGAGCAGGCATGTCTACCATCAAGCGCACACAAAACGTAGCCGCCAAGGTAGCTGCTCAGCGGCTTGCTCAAGTTATGGCCTCCCA
GACTGCCGACGATGACGATGATGACGATGATTTGGGGTTTAGATTCAGTAATCAGTCAGCTCCTCCTCCTTCCTCCAACTTGGGCAACGGTTTTAGTCAC
AGCAGCAAGAACAGTGCTACTGCGGCCATTTATTTTACTAGAGGGAACAGATCTCCATCCCCTGCGTTAGGTCGAAACTTTGTAGAGCAAGTTCCTCAGC
CTCGGTCCTCATCGACAGGACGATCCACTATGTCTGCGCGAACTTCATTGATGCCGTCTAGTAAGTCAACTGTGAGGACTCCCATTCCTATACCTGCCAT
TGATCCTTCCACTGTCAAGATCCGAGATAAAAGGTTTAGTTCAGATGTGGGGCAACCTAAGAAGGACAGTGGAGATCAGCGTGAAGCATCTGCACTTCGT
GATGAACTTGATATGCTACAAGAGGAAAATGAGATCATAGTTGACAAGCTTCGTCGTGCAGAAGAAACACGCCAGGAAGCTGAGGCTCGTGCACGGGAAC
TTGAGAAACAGGTAGCTGCTCTTGGTGAAGGGGGTTTCCTTGAAGCTAAACTCTTAAGCAGGAAAGAAGCAGTCCTGCGTCAAAGAGAGGCTGCACTAAA
GGCGGCACAGCAAACCAAAGATGGTAGAGATGAAGAAATTGCAGCTTTGCGCTCAGAACTTGAGAATATTAAGGATGAGGCAGCAACAGCTGTGGAGCAG
CTACAAGAAGCAGAATCTGAAGCTAAATCACTCCGCACTATGACTCAGAGAATGATTTTGACTCAAGAAGAAATGGAGGAAGTAGTTCTGAAAAGATGTT
GGCTTGCTCGATACTGGGGTTTGGCTGTGCAACACGGCATTTGTGCAGATATAGCAGCATCAAAGCATGAACATTGGTCCGCTTTAGCTCCCCTGCCATT
TGAGGTTGTGATTTCTGCTGGACAGAAGGCAAAGGAAGAAGCTAGAGTTGACAGTAATTCAGATAGAAGTAAATCTGCTCGCGATTTGAGTGATTTAACA
GGAGAAGGAAATATTGAGAGTATGCTTTCGGTTGAAATGGGACTGAGGGAATTGGCTTCTTTGAAGGTTGAGGATGCTGTTGTCCTTGCATTGGGCCAGC
GCAAAAGAGCTAATCTAAAATCCCTTGGTGAGCCCAAGTACTCTGAAGCCGTTGAGCTGAGTGAAGGCGAGGCAGAAGATGTTCTTTTCAAGGAGGCATG
GCTAACATATTACTGGAGAAGAGCGAAAGGGCATGGCGTGGAAGAGGATATTGCGGGAGAGCGTCTTCAGAATTGGATCAGTCGTAGTGGAAAGGCACCA
ACCTCGCACGATGCTGTGGACGTCGAGAGAGGGTTGGTAGAGCTAAGGAAGTTGAGCATAGAGCAACAACTTTGGGAAGCGTCACGAAAAGAAATCGATC
TCCAACCTTCACAACTTGCTGCTGTTGCTACTAATCACAAATCTCCCACAGACTCCGACCTCTCTTCGTAA
AA sequence
>Lus10036015 pacid=23141025 polypeptide=Lus10036015 locus=Lus10036015.g ID=Lus10036015.BGIv1.0 annot-version=v1.0
MDRRRAGSPVYGRQWSGGSSSTGSSSPAMSPAHPSSRLGAGMSTIKRTQNVAAKVAAQRLAQVMASQTADDDDDDDDLGFRFSNQSAPPPSSNLGNGFSH
SSKNSATAAIYFTRGNRSPSPALGRNFVEQVPQPRSSSTGRSTMSARTSLMPSSKSTVRTPIPIPAIDPSTVKIRDKRFSSDVGQPKKDSGDQREASALR
DELDMLQEENEIIVDKLRRAEETRQEAEARARELEKQVAALGEGGFLEAKLLSRKEAVLRQREAALKAAQQTKDGRDEEIAALRSELENIKDEAATAVEQ
LQEAESEAKSLRTMTQRMILTQEEMEEVVLKRCWLARYWGLAVQHGICADIAASKHEHWSALAPLPFEVVISAGQKAKEEARVDSNSDRSKSARDLSDLT
GEGNIESMLSVEMGLRELASLKVEDAVVLALGQRKRANLKSLGEPKYSEAVELSEGEAEDVLFKEAWLTYYWRRAKGHGVEEDIAGERLQNWISRSGKAP
TSHDAVDVERGLVELRKLSIEQQLWEASRKEIDLQPSQLAAVATNHKSPTDSDLSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G48860 unknown protein Lus10036015
[exp]
0 1
AT1G72710 CKL2 casein kinase 1-like protein 2... Lus10037621
[exp]
1.4 0.9528
AT1G54610 Protein kinase superfamily pro... Lus10004144
[exp]
2.2 0.9351
AT1G72710 CKL2 casein kinase 1-like protein 2... Lus10006879
[exp]
3.0 0.9394
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Lus10020459
[exp]
3.5 0.9168
AT3G08790 ENTH/VHS/GAT family protein (.... Lus10011689
[exp]
3.5 0.9308
AT1G54100 ALDH7B4 aldehyde dehydrogenase 7B4 (.1... Lus10013155
[exp]
4.2 0.9515
AT5G47390 MYB myb-like transcription factor ... Lus10004248
[exp]
7.2 0.9158
AT1G02305 Cysteine proteinases superfami... Lus10007212
[exp]
8.9 0.9365
AT3G08860 PYD4 PYRIMIDINE 4 (.1) Lus10025262
[exp]
10.0 0.8906
AT1G29760 Putative adipose-regulatory pr... Lus10034735
[exp]
11.0 0.9174

Lus10036015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.