Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 662 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 636 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 405 / 1e-137 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 385 / 1e-129 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G42240 380 / 7e-128 SCPL42 serine carboxypeptidase-like 42 (.1) AT2G12480 349 / 4e-116 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 324 / 5e-106 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 322 / 3e-105 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 320 / 1e-104 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 318 / 1e-103 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016722 [exp] 870 / 0 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 533 / 0 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 482 / 1e-167 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 480 / 9e-167 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 476 / 3e-165 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 475 / 5e-165 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 470 / 9e-163 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 444 / 9e-153 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 441 / 3e-151 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105500 [exp] 711 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 671 / 0 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 666 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 653 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 571 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 533 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.016G034600 [exp] 503 / 6e-176 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 500 / 1e-174 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 492 / 2e-171 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 385 / 2e-129 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10036016 pacid=23141193 polypeptide=Lus10036016 locus=Lus10036016.g ID=Lus10036016.BGIv1.0 annot-version=v1.0 ATGGCAATGCCATTGACGCAGCTGATGAGTTTGGTCTTGGGTTGTCTGCTGTTTCAGCTCTGCATTTCCATGGTGATGGTAGAGTCTCTTCTTCCTCCTC CTCCTCCCCATCCTGATGAGATATCTAGCCTTCCTGGGCAACCACCCCAAGTGAGGTTTCGCCAATTTTCAGGTTATGTCACTGTGGATTACAAGAAGAA AACTTCTCTTTTCTACTACTTTGTTGAAGCTGAAACAGATCCAGCTTCCAAGCCCTTGGTCCTTTGGCTCAATGGAGGGCCAGGGTGTTCTTCTCTGGGA GTTGGTGCTTTCTCTGAGAATGGACCCTTCAGACCCAACGGCAAGAATTTGGTTAAAAATGGGTTTAGTTGGAATAGAGAAGCAAACATGTTGTATTTGG AAACGCCAGTTGGAGTTGGATTCTCTTACTCCAACGATAACTCTTCCTACGTTTCTGTGGACGATGAATCAACTGCCAGGGGCAACGTTATATTCCTGCA AAGGTGGTTCAATAAGTTCCCTCAGTACAGGCAAAGGGATTTGTTTATAACTGGGGAAAGTTATGCAGGGCATTATATTCCTCAACTTGCGAAACTGATG CTTGAGATCAACAGAAAAGAGCAGATTTTCCATTTGAAGGGAATTGCAATGGGGAATCCTGTGCTTGAATTTGCGACGGATTTGAACTCAAGAGCCGAGT ATTTCTGGTCTCATGGTCTGATATCAGATTCAACATACAAGCTCTTCACCTCGTCGTGCAACTACTCCAGATACGTGAGTGAATACTATAGGGACTCGGT TTCAGACATATGTGGTGCTGTGATGAATCAAGTTACCACTGAAACCAGTAGGTTTGTGGACAAGTATGATGTTACTCTCGATGTCTGCATTCCATCAATA CTCTCACAATCTAAAGTAATAAGTCCCAAGGGAATATCGGAGCCTGTTGATGTGTGCGTGGAGGATGAAACTGTGAATTACTTGAATCGGAAAGATGTAA AGATAGCTCTCCATGCAAAGCTTGTTGGAGTTGGGACATGGGCAGTATGCAGCAGCATTCTGGATTATGATGTGCTCAACATAGAGAACCCCACGGTTCC AATCCTGGGATTACTTATCAAGGCAGGAATTCGAGTATTGGTTTACAGTGGAGATCAAGATTCAGTGATTCCATTAATGGGTAGCCGAACAATTGTCCAT AGACTAGGAAAGCAGCTGGGGCTGAATACAACAGTACCTTACAGAGCGTGGTTTGCAGGGGAACAGGTTGGTGGGTGGAATCAAGTCTATGGGGAAATGT TGTCATTTGCAACAATTAGAGGAGCATCCCATGAAGCTCCATTCTCACAGCCAGAGAGGTCACTCATGCTATTCAAGTCATTCCTGGAAGGGAAGCCTCT CCCTCGATGTTGTAGATGGGGACAAAATGGGTCCCCTCAAAAGGGCAGCGTGCAAAAGGTCAGTGGTCACCCATTCCATTTCTCATCATTGCCCCTTTGG CACTGA
AA sequence Show only first row Show all	>Lus10036016 pacid=23141193 polypeptide=Lus10036016 locus=Lus10036016.g ID=Lus10036016.BGIv1.0 annot-version=v1.0 MAMPLTQLMSLVLGCLLFQLCISMVMVESLLPPPPPHPDEISSLPGQPPQVRFRQFSGYVTVDYKKKTSLFYYFVEAETDPASKPLVLWLNGGPGCSSLG VGAFSENGPFRPNGKNLVKNGFSWNREANMLYLETPVGVGFSYSNDNSSYVSVDDESTARGNVIFLQRWFNKFPQYRQRDLFITGESYAGHYIPQLAKLM LEINRKEQIFHLKGIAMGNPVLEFATDLNSRAEYFWSHGLISDSTYKLFTSSCNYSRYVSEYYRDSVSDICGAVMNQVTTETSRFVDKYDVTLDVCIPSI LSQSKVISPKGISEPVDVCVEDETVNYLNRKDVKIALHAKLVGVGTWAVCSSILDYDVLNIENPTVPILGLLIKAGIRVLVYSGDQDSVIPLMGSRTIVH RLGKQLGLNTTVPYRAWFAGEQVGGWNQVYGEMLSFATIRGASHEAPFSQPERSLMLFKSFLEGKPLPRCCRWGQNGSPQKGSVQKVSGHPFHFSSLPLW H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10036016 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	2.2	0.8795
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	7.9	0.7865
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	15.0	0.7584
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	22.8	0.7186
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	26.1	0.6986
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	27.1	0.7560
AT1G06980			unknown protein		Lus10038171 [exp]	27.2	0.7223
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10014188 [exp]	32.2	0.7229
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	37.3	0.7583
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	44.5	0.7403

Compare expression of checked genes

Lus10036016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.