Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61980 993 / 0 AGD1 ARF-GAP domain 1 (.1) AT5G13300 929 / 0 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT1G10870 556 / 0 AGD4 ARF-GAP domain 4 (.1) AT1G60860 555 / 0 AGD2 ARF-GAP domain 2 (.1) AT5G54310 104 / 3e-23 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 96 / 4e-22 AGD15 ARF-GAP domain 15 (.1) AT3G07940 91 / 3e-19 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 90 / 3e-19 AGD13 ARF-GAP domain 13 (.1) AT4G21160 90 / 4e-19 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G17890 76 / 3e-14 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016724 [exp] 1483 / 0 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10001799 [exp] 903 / 0 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 854 / 0 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10030568 [exp] 553 / 0 AT1G60860 925 / 0.0 ARF-GAP domain 2 (.1) Lus10030921 [exp] 277 / 3e-82 AT1G60860 608 / 0.0 ARF-GAP domain 2 (.1) Lus10038582 [exp] 100 / 3e-22 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 97 / 3e-22 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 94 / 5e-20 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 93 / 1e-19 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105500 [exp] 1053 / 0 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.003G163200 [exp] 955 / 0 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.001G066800 [exp] 946 / 0 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.011G127000 [exp] 106 / 7e-24 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 105 / 1e-23 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 100 / 4e-22 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 95 / 9e-22 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G044100 [exp] 99 / 1e-21 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G372000 [exp] 87 / 2e-18 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G026400 [exp] 86 / 2e-18 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10036018 pacid=23141007 polypeptide=Lus10036018 locus=Lus10036018.g ID=Lus10036018.BGIv1.0 annot-version=v1.0 ATGCACTTCGCCAAGCTTGATGACTCGCCGATGTTTCGGCAACAGGATACAATTTCTTATAAGTTACTTGGCAATTTCAGAGAAGTCCTGGGTGAAGAGT ATGATGGAGATGTTGCTTTTGCCACTGCTCTTGAATCTTTTGGAGGTGGACATAATGATCCTATATGTGTTGCTTTTGGAGGCCCTGTTATGAACAAATT TACAATTGCCTTGAGAGAAATCGGGACTTACAGAGAAGTCCTTAGGTCACAGGTGGAGCACATGCTGAGTGATAGATTGTTACAATTCGTGAATGTTGAC CTGCAAGATATTAAGGAAGCAAGGAAACGCTTCGATAAGGCCTCCTTGATATATGAACAGGCCCGAGATAAGTTCCTATCTTTGAGGAAGAGCACTAGGA TTGATGTTGCCACCGTAATAGAGGAGGTCAGTGCTCTCTCTATTGTTGAAGCAAAGAAGAGGTATGAATTTTTAGAGTCTGTAAGCGGCATGATGGATGC TCATCTTCGATTCTTTAAACAGGGATATGAGCTACTACATCAGATGGAGCCATTTATTAACCAGGTCCTGGCTTATGCACAGCAATCTAGGGAATGTTCT AATTATGAGCAGGCTTCTCTTAATGAAAGGATGCATGAATATATGAGGCAAATTGACCGAGAGAATAGGCATTCCTTACATGGAAATCCTGGTTCACCTC ATGCTGATGGGAGGCCTTGTATTAGGAGTTCCCAAAAAGTTATAGAGGCAGTTATGGAATCTGCAACGCATGGGAAGGTCGAAACCATCCGACAAGGTTA TCTGTCAAAGCGTTCGTCAAACTTGAGGGGTGATTGGAAGAGACGCTTTTTTGTGCTTGATAGTCGAGGGTTACTTTATTACTACCGCAAACCCTTCGTA TGGGCGCACGCAGGTGGGACTCAATCAACTCTACAGAGGAATGCATCCTCCGAGAATGGTCCTGGACTACTGAGTCGATGGCTCTCTTCTCATTACCATG GCAGCGTGCATGATGAGAAAACAGCAGCACGTCACACTGTAAACCTGCTAACATCAACAATCAAGGTTGATGCAGATCAGACAGATTTAAGATTCTGCTT CCGAATCATTTCACCAGTCAAAGTATATACTTTACAGGCCGAAAACGCTGTTGATCAAATGGATTGGATTGAGAAAATAACTGGAGTCATCACTTCATTG TTGAGTTTTCAAACACCTGAAAAATGTATCTCAACAGCCGCATTGGGATTCAGTGATAGTCAATCTTTCAGTGATGGTAGCTCATTAGTAGATTCTCATG ACATCGAGAATTCAAATTTAGAGGAATTCACATCTAGTAATGTTATCGGTGGGAGCCATTTAAACCCATCAAGGAATTTGCTACCAGGTAGCAGCATCAA AGGTGAAAAGCCAATCAATCTCCTCAGAAGAGTGCCTGGGAATGACAGATGTGCGGACTGTGGTGCACCTGAACCAGATTGGGCTTCCTTGAATCTTGGT GTCCTCATATGCATTGAATGTTCTGGTGTTCATCGCAATCTTGGTGTCCACATATCAAAGGTAAGATCATTAACACTTGATGTCAAAGCCTGGGAGCCAT CTGTCTTAATGTTGTTCCAATCGCTGGGCAATCATTGTGCAAATTCAATCTGGGAGGAATTAATGAATTCAGATGCTTCCACTACCATGCATGCTGCTGA AGAAATGACAAAGGGGTCCTCGAAAACTGATAAACAAAGGCTCTTCAATATTAAAAGACCGAATCACAATGATCCAATCACACTCAAGGAGCAGTTCATC CATGCAAAATACAAAGAAAAGATTTTTGTTCGTAAGATAAAGGACTTTCCTTCAGTCTCACAACAGTTGTGGAAATGTGTGTGGGGGAATGACAAAAAAG GAGTTTACCGCCAGATTGTCTGCTCTGGAATAGATTTAAATGCAATTTATAGGCAATCCTCCATTAGTGAAGATCAACCACCTATGGAATTGTCTGATAA ATGTTCTGTCCTTCACCTGGCCTGCCTAAATACTGATATTGGAATGGTAGAACTACTTCTACAATATGGGGCAAACGTGAATGCTTTTGATTCCAAAAAC CAGACTCCATTACATCATTGTGTTATTGGAAAACGAACTGCTATTGCAAGGTTGCTTCTTGCCAGGGGCGCAGATCCACGAGCTGTAAGCAGAGATGGAA ATACAGCTCTGAAGCTTTTGTCTCAGTCCTCTTTGGATGATAATGAGCTAGAAGGTTTGTTGGCAGGAAAATGA
AA sequence Show only first row Show all	>Lus10036018 pacid=23141007 polypeptide=Lus10036018 locus=Lus10036018.g ID=Lus10036018.BGIv1.0 annot-version=v1.0 MHFAKLDDSPMFRQQDTISYKLLGNFREVLGEEYDGDVAFATALESFGGGHNDPICVAFGGPVMNKFTIALREIGTYREVLRSQVEHMLSDRLLQFVNVD LQDIKEARKRFDKASLIYEQARDKFLSLRKSTRIDVATVIEEVSALSIVEAKKRYEFLESVSGMMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECS NYEQASLNERMHEYMRQIDRENRHSLHGNPGSPHADGRPCIRSSQKVIEAVMESATHGKVETIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKPFV WAHAGGTQSTLQRNASSENGPGLLSRWLSSHYHGSVHDEKTAARHTVNLLTSTIKVDADQTDLRFCFRIISPVKVYTLQAENAVDQMDWIEKITGVITSL LSFQTPEKCISTAALGFSDSQSFSDGSSLVDSHDIENSNLEEFTSSNVIGGSHLNPSRNLLPGSSIKGEKPINLLRRVPGNDRCADCGAPEPDWASLNLG VLICIECSGVHRNLGVHISKVRSLTLDVKAWEPSVLMLFQSLGNHCANSIWEELMNSDASTTMHAAEEMTKGSSKTDKQRLFNIKRPNHNDPITLKEQFI HAKYKEKIFVRKIKDFPSVSQQLWKCVWGNDKKGVYRQIVCSGIDLNAIYRQSSISEDQPPMELSDKCSVLHLACLNTDIGMVELLLQYGANVNAFDSKN QTPLHHCVIGKRTAIARLLLARGADPRAVSRDGNTALKLLSQSSLDDNELEGLLAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	0	1
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	2.0	0.8730
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	3.0	0.8482
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	4.5	0.8583
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	5.2	0.8773
AT4G23050			PAS domain-containing protein ...		Lus10024502 [exp]	15.0	0.8279
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	16.3	0.8693
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	19.7	0.8368
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	19.9	0.8632
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	21.9	0.8027
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Lus10000769 [exp]	23.5	0.7584

Compare expression of checked genes

Lus10036018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.