Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61990 577 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 356 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 348 / 6e-108 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 343 / 2e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G55840 338 / 4e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 313 / 9e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 314 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 313 / 6e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 309 / 1e-94 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 308 / 5e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016727 [exp] 1084 / 0 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016729 [exp] 506 / 5e-173 AT5G39710 243 / 4e-73 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016726 [exp] 377 / 4e-126 AT5G61990 166 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 339 / 8e-103 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 331 / 6e-101 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027914 [exp] 326 / 2e-99 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 322 / 4e-98 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 327 / 9e-98 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008185 [exp] 324 / 6e-97 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 915 / 0 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 355 / 2e-109 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G040200 [exp] 352 / 1e-107 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 341 / 2e-105 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 342 / 4e-104 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 331 / 4e-102 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 341 / 5e-102 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 329 / 6e-100 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 316 / 1e-96 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 314 / 1e-95 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036020 pacid=23141023 polypeptide=Lus10036020 locus=Lus10036020.g ID=Lus10036020.BGIv1.0 annot-version=v1.0 ATGGCCGTTTTGTGTTACCGGAACCTTCAAGTTTTCAAGAATCGCAACATAAATGTGGTACTCGGGGCGAGAATCGGTCGCCTCAAATGGCAGTCGTTAA GCTCAACCGCGGGTGGCCAGGACAACAACAGCACCACAGTGAAGGAGATAGCGGTGTTTCTCGAGCAACACAACTGGCAGCATCTCATCGGGTCGTCGCC AATCCGCCCTATGCTCAACCCGGAGGTTGTGCACTCTGTCATCAGACAGAAGCTCGTAAAAGACCCTCTGCGCTTACTTGGTTTCTTCAATTGGACACAT TATCGTTTGGGTATCCTTCCACATCTCTCTTCATTCTCGATGCTAGCTTTACATCTATGTGACGCCCGGCTTTTTGCTCCTGCCAGTGGGGTCTTAGATC AAATGCTGGAAATAGGGAGGTCGCATCTAGATATTTTGGATTCTGTAATGGAGAGTTGCAGAGAGGTTAGTGGCAATGACGACGCCTTGGTTTTTCAGAT ACTGATTAATGCTTACAAGAAAAAGGAAATGTTGGATCATGCCGTAGATGTCTTTTTAGGTGCCAAATCCAATGGTTTTTTAGTCGATTTGCTGTGCTGC AACTCGCTTTTAAAGGATCTGGTTAAACGTAATAGATTGGAGCTGTTTTGGAAAGTGTATGAGGGGATGTTAGATGTTAAGATAGTTGCTGATGTTTACA CCTACACAAATGTGATAAATGCGCAATGCAAGCAAGGGAATGTTAAAGAGGGCCAACGTTTGCTTTCTGAAATGGAAGAGAAAGGTTGCAGTCCAAACTT GGTCACTTACAATGTGTTGATTGGTGGGTTGTGTAGAGCTGGGGATTTTGATGGAGCTATAGAGTTAAAGAAGAAGATGATTGATAAGGGTTTTATTCCA GACAGCTATACTTTCACTCTTCTTATTGATGGCTATTGTAAACAGAAACGATCAGCTGACGCCAAATTAGTGTTGGAGGAGATGTATCTCTTGGGTTTCA AGCCAGACCATATTTGTTATACTGCGTTGATTGACGGGCTAACCAAAGAAGGTAAATTGGGAGAAGCAATTCAATTGAAACAGGATATGTTTACTCGTGG AGTTCAACCTAACTATTTAACATATAATGTGTTGCTCAGTGGACTGTGTAAAGCTGGCCAGATGGAGAAGGCAGAAGCCCTTTTCAGTGAAATGCTTGCT GTTGGGCTTAAACCTAATGCTTATACTTATGGTTTTTTGATTGATGGGTACTGCAAGGTGCTGAATATAGCTAAAGCTTGTGCTTTTCTGGTTGAAATGA AGAAGATGAACTTGTTTCCCACTGCATACACATGTGGCGCGATATTCAATGGCCTTTGCCAAATTGGAGATCTTAATGGTGCTGGTATATTGTTTGAGGA GATGATTTCTTGGGGTGTCAAACCAAATCTTTTGTTCTACACAACTCTGATCAAAGGGACTGTCCAGCAAGGAAGATTTCAGGAGGCCATAAAACATTTG AAGGTCATGAAGGAGAAAGGGCCTCTCCCTGACCTTTTTTGCTACAATATGGTCATAATTGGTCTTTGCAAGGCCAATAAATTTGAAGAAGCTAGGATTT ACTTGGTTGAAATGATAGACAGGGGAATAAAGCCAAATGTATATACTTATGGAGCGTTTATTCATGCATACTGTAGAGCAGGGCAAATGCATGCTGCACA GAATTGCTTCACAGAGATGCTTGGCTATGGTATTGAACCTAATGACGTGGTATATACAGCCCTCGTTAATGGGCATTGCAAGGATGGTGACACGACACAG GCGTTCGCAACGTTTAGATCTATGCTAGAAAAAGGCGTGCTACCGGACATTCGAACTTACAGTGAGTTCATCCATGGTCTTTCTACGAATGGAAAGCTTC AGGAAGCTATGTCTGTTTTCTCTCAAATGCTTGAAAGAAATTTGGAACCTGATGTATTTGCTTATAACTCTCTCATTTCCGGCTTCTGTAAGCAAGGTGA TATAGACAAGGCTTTTGAACTCCATGTTGATATGTGTCAAAGAAATGTTGGTCCAAATATTGTTACTTATAATACACTTGTAAATGGACTTTTGAAGGCT GGCGAAATTGACAAAGCTAGGGTACTCTTTGATGAAATTCAAGTGAAGGGTTTGACTCGGAACAGTATTACTTATGCCACAATGATTGATGGATACAGCA AATCTGGCAGTTTAAACAAGGCCTTTGAGCTTTTGGAGGAGATGCTAGCGGAAGCTGTTCCTCCTGATAGCTATGTATATTGTGCCCTGATTGATGGATG TTGCAAAGAGGGAAACATGGAGAAAGCTCTATCTTTATTCGAAGAAATGGTACACAAGGGCTGTCACTCTACGCATGCTTTGAATGCTTTCGTTGATGGC TTCTGCAAATGTCTTCTGCAAATTGACGAAGCTGAACGAAGCCAACCAACTGTTGGGAGATACGCAGATTGCACCAAATGA
AA sequence Show only first row Show all	>Lus10036020 pacid=23141023 polypeptide=Lus10036020 locus=Lus10036020.g ID=Lus10036020.BGIv1.0 annot-version=v1.0 MAVLCYRNLQVFKNRNINVVLGARIGRLKWQSLSSTAGGQDNNSTTVKEIAVFLEQHNWQHLIGSSPIRPMLNPEVVHSVIRQKLVKDPLRLLGFFNWTH YRLGILPHLSSFSMLALHLCDARLFAPASGVLDQMLEIGRSHLDILDSVMESCREVSGNDDALVFQILINAYKKKEMLDHAVDVFLGAKSNGFLVDLLCC NSLLKDLVKRNRLELFWKVYEGMLDVKIVADVYTYTNVINAQCKQGNVKEGQRLLSEMEEKGCSPNLVTYNVLIGGLCRAGDFDGAIELKKKMIDKGFIP DSYTFTLLIDGYCKQKRSADAKLVLEEMYLLGFKPDHICYTALIDGLTKEGKLGEAIQLKQDMFTRGVQPNYLTYNVLLSGLCKAGQMEKAEALFSEMLA VGLKPNAYTYGFLIDGYCKVLNIAKACAFLVEMKKMNLFPTAYTCGAIFNGLCQIGDLNGAGILFEEMISWGVKPNLLFYTTLIKGTVQQGRFQEAIKHL KVMKEKGPLPDLFCYNMVIIGLCKANKFEEARIYLVEMIDRGIKPNVYTYGAFIHAYCRAGQMHAAQNCFTEMLGYGIEPNDVVYTALVNGHCKDGDTTQ AFATFRSMLEKGVLPDIRTYSEFIHGLSTNGKLQEAMSVFSQMLERNLEPDVFAYNSLISGFCKQGDIDKAFELHVDMCQRNVGPNIVTYNTLVNGLLKA GEIDKARVLFDEIQVKGLTRNSITYATMIDGYSKSGSLNKAFELLEEMLAEAVPPDSYVYCALIDGCCKEGNMEKALSLFEEMVHKGCHSTHALNAFVDG FCKCLLQIDEAERSQPTVGRYADCTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	1.0	0.9735
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	2.8	0.9380
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	3.2	0.9407
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	3.7	0.9527
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	4.0	0.9426
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	6.7	0.9311
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	7.2	0.9254
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	7.3	0.9244
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	7.4	0.9143
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	7.9	0.9392

Compare expression of checked genes

Lus10036020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.