Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60500 406 / 5e-137 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G12990 355 / 6e-119 RRP45A ribonuclease PH45A (.1.2.3) AT1G60080 88 / 7e-19 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009708 [exp] 783 / 0 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10021789 [exp] 79 / 8e-16 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10001747 [exp] 73 / 7e-14 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10001173 [exp] 72 / 1e-13 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10034605 [exp] 64 / 8e-11 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10012336 [exp] 45 / 7e-05 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2) Lus10006382 [exp] 45 / 0.0001 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047500 [exp] 484 / 3e-167 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.001G253200 [exp] 473 / 5e-163 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.016G055600 [exp] 72 / 1e-13 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10036022 pacid=23141153 polypeptide=Lus10036022 locus=Lus10036022.g ID=Lus10036022.BGIv1.0 annot-version=v1.0 ATGATCTTTAGGAATGAATGGAAACGAACCGCCTCCAGTGACCCAGCAGCGGCGACCGGCGGTAAAGCAGCAATCGGCGGTCACCAGCTACGTTCAGCAG CGACTTCTAGAAGCGTTTCCCTCCGACCTGCTTACTATCTGGAGGCATCAATGGATTCTCGGTTGGCTAATACGTGGCGGTTGACTGTTAACGAGAAGAA ATTTATAGAGACTGCTTTGGCTTCCGATTTGAGAATTGACGGCCGCAATCCCCTTGAGTATCGGAAACTGACAATCAAATTTGGAAGGCAGGTTTTTGTT GTCTCTCCCCCTAAAGACAGTGATTTTCATCTCCTTTTCTTACCTTTCTGTTGGTTTCCACTGTCAGTACTGGGTATACTTCTTAAATTGTCTTCAGAGG CTGGAAAATATGTAGCTTTTCCTAACAAATGTGGCTCCTGCAGCTCAGACATTTTGGTTTCATCTGGGGAGGATGGGTCGTCAGAGGTGCAACTAGGTCA TACTCATGTAATGGGTTTTGTTTCTAGTCAACTTGTTCAACCTTACCGCGACAGGCCAAATGAGGGAACGATGTCAATTTTTACCGAGTTTTCTCCAATG GCTGATCCATCTTTTGAGTTAGGCCGTCCTGGAGAATCTGCAATAGAGTTGGGCCGCATAATCGATCGAGGCTTAAGGGAAAGCAGGGCTGTCGATATGG AATCACTTTGTGTTTTGGCAGGGAAGTTAGTTTGGGCCATCCGGATTGATATCCACATCTTAGATAATGGAGGTAATCTTGTTGATGCTGCCAACGTTGC GGCTTTAGCTGCCCTGTTGACCTTTCGGAGACCAGAATGTTCATTATGTGGAGAAAATGGACAAGAAGTAGTTGTACATCCACCTGAGCCATCACCTGTT CAACGTTTTGAATTGTCTGTTCATTGTGGTTCTTGCACTCTGCAGGTTAAGGAGCCACTTCCTTTGATAGTACATCATATTCCTATAGCAGTAACATTTG CGTTTTTCAGCACTGAGCACACTGTGGCAGTGGATCCAACCCATAGCGAGGAGGCTGTTATGGGGGGCCGTATTACAGTAACGGTTAATGCAAGTGGCGA TATTTGTGCCATTCAAAAAGCTGGAGGACTGGGTGTGCCGCAGAGTGACATTATGCGTTGCATACGACTTGCTTCCCGCAATGCTGAGTCTATTACAAAA AAGATAAAAGACGCAGTTGAAGCATACAACTCAGAGAGAGCGTTGCGCAAAATAAAGAGACATTCTACTCCTGTTGCCGCCAATGTTGATGTAGAAAATG ATAATGTCAAGGAGCAAAATAACAAACTTCCTGCGGAAAGAGTATATGACTTTTCAACGGCCCAGATGGAGAAACTGAAGTTAAAATCTGATGGAAGTTC CATCAATGAAGCTGATTTAGATCATCATACTAGATCATCTGAGCAAGTTGGAAGTCGGCGTGCTGAGGGAAATGCTTCTGTTTTTCTTGGAGGGCCTTCA TGCTGGGATCCTCACACGCAAGGTGTTGATCCAGATTTCCTGAAAGCATCTCTTGCTTCACAAGGGAAATCCGACTCCAAAGCAGAACAAGATAGTGAAG ATAGCGATAATGACGTCCTAATGCAGGAAAAGCTATCTGAAGATGCTAAACCTTCTAGCTTAGCGTCAGATTCATCCGAACCAGTAGCACAAACCGGCAG GGTGAAGACTCTCAAGGATGCCGTCAAGCCAAAGAACAAGAGAAGAAAGAGGGCCAACTCCAACATGAATGTCAGTTAG
AA sequence Show only first row Show all	>Lus10036022 pacid=23141153 polypeptide=Lus10036022 locus=Lus10036022.g ID=Lus10036022.BGIv1.0 annot-version=v1.0 MIFRNEWKRTASSDPAAATGGKAAIGGHQLRSAATSRSVSLRPAYYLEASMDSRLANTWRLTVNEKKFIETALASDLRIDGRNPLEYRKLTIKFGRQVFV VSPPKDSDFHLLFLPFCWFPLSVLGILLKLSSEAGKYVAFPNKCGSCSSDILVSSGEDGSSEVQLGHTHVMGFVSSQLVQPYRDRPNEGTMSIFTEFSPM ADPSFELGRPGESAIELGRIIDRGLRESRAVDMESLCVLAGKLVWAIRIDIHILDNGGNLVDAANVAALAALLTFRRPECSLCGENGQEVVVHPPEPSPV QRFELSVHCGSCTLQVKEPLPLIVHHIPIAVTFAFFSTEHTVAVDPTHSEEAVMGGRITVTVNASGDICAIQKAGGLGVPQSDIMRCIRLASRNAESITK KIKDAVEAYNSERALRKIKRHSTPVAANVDVENDNVKEQNNKLPAERVYDFSTAQMEKLKLKSDGSSINEADLDHHTRSSEQVGSRRAEGNASVFLGGPS CWDPHTQGVDPDFLKASLASQGKSDSKAEQDSEDSDNDVLMQEKLSEDAKPSSLASDSSEPVAQTGRVKTLKDAVKPKNKRRKRANSNMNVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	2.0	0.9149
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	2.4	0.8751
AT1G73350			unknown protein		Lus10042294 [exp]	3.2	0.8965
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	3.5	0.8945
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	4.5	0.8794
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	5.2	0.8709
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	5.9	0.8745
					Lus10031452 [exp]	6.3	0.8731
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	7.5	0.8056
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	7.7	0.8610

Compare expression of checked genes

Lus10036022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.