Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57090 164 / 8e-52 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12390 144 / 8e-44 FIS1B FISSION 1B, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009706 [exp] 230 / 2e-77 AT3G57090 237 / 6e-81 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009707 [exp] 89 / 5e-23 AT5G12390 96 / 6e-27 FISSION 1B, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047300 [exp] 201 / 3e-66 AT3G57090 203 / 9e-68 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G041900 [exp] 175 / 8e-56 AT3G57090 215 / 2e-72 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038900 [exp] 172 / 9e-55 AT3G57090 216 / 1e-72 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036023 pacid=23141231 polypeptide=Lus10036023 locus=Lus10036023.g ID=Lus10036023.BGIv1.0 annot-version=v1.0 ATGGAAGCCAAGCTCGGCAAGTTCTTCGAGTCCGTCACTAACTTCTTCTCCGGTGGCGATCAGATCCCCTGGTGTGACCGTGACATCGTCGCCCTAGTAG CCTACAGTATCGTCGTGCTTCTGTGTGGAAATGGCTTCCATCCTGTCGAGAAAGCGTTCATTACGGCTGTTAAATTCAAGGATGGTGCCTTCCATTTCAC TACTGCTACGTTTTGTGGTTGCGAGCAAGAGGTTGTTGAAGCTCAAAAGGGTTCCAATGAGGAACTGAAGAATGAATGCATCATGCGTTTATCATGGGCT CTGGTTCACTCGAAGCAACCAGAAGATGTTCAACGCGGCATAGCTATGCTTGAATCTTCGCTGGGAAATTCCACCAGCCCTTTGAAACAGAGAGAGAAAC TGTATCTTCTGGCTATTGGGTACTTCAGGAGCAGTGAGTACTCGAGGAGCAGGGAGGTGGTGGAAGAATGTTTGAAGATCGAACCAGAATGGAGGCAGGC ACAGACGCTGAAGAAAGCCATTGAAGATCAGGTCACAAAAGATGGTGTGATCGGGATAGGAATTGCAGCTACTGCAGTTGGATTGGTTGCTGGTGGGATT GCTGCTGCTTTGGCGCGGAGGAACTGA
AA sequence Show only first row Show all	>Lus10036023 pacid=23141231 polypeptide=Lus10036023 locus=Lus10036023.g ID=Lus10036023.BGIv1.0 annot-version=v1.0 MEAKLGKFFESVTNFFSGGDQIPWCDRDIVALVAYSIVVLLCGNGFHPVEKAFITAVKFKDGAFHFTTATFCGCEQEVVEAQKGSNEELKNECIMRLSWA LVHSKQPEDVQRGIAMLESSLGNSTSPLKQREKLYLLAIGYFRSSEYSRSREVVEECLKIEPEWRQAQTLKKAIEDQVTKDGVIGIGIAATAVGLVAGGI AAALARRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	0	1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	1.7	0.9525
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	2.0	0.9559
AT1G80180			unknown protein		Lus10030064 [exp]	3.3	0.9353
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	3.9	0.9571
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	5.5	0.9444
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	6.2	0.9211
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	7.5	0.9447
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	8.2	0.9242
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	9.6	0.9250
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	11.7	0.9185

Compare expression of checked genes

Lus10036023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.