Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56630 376 / 2e-125 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 364 / 6e-121 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT5G63450 346 / 1e-113 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT2G27690 339 / 3e-111 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G48520 339 / 5e-111 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT3G01900 337 / 4e-110 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT5G08250 320 / 7e-104 Cytochrome P450 superfamily protein (.1) AT1G63710 316 / 1e-101 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT2G45970 312 / 4e-100 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G01600 310 / 3e-99 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014742 [exp] 399 / 2e-134 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 386 / 3e-129 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014741 [exp] 386 / 5e-129 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 376 / 3e-125 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 344 / 2e-112 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 343 / 2e-112 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10040687 [exp] 315 / 1e-101 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 312 / 2e-100 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10032278 [exp] 308 / 7e-98 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220900 [exp] 413 / 1e-139 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 412 / 2e-139 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 410 / 1e-138 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 403 / 6e-136 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 401 / 4e-135 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 377 / 9e-126 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.012G096800 [exp] 359 / 1e-118 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.001G331100 [exp] 343 / 2e-112 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.001G277305 [exp] 333 / 2e-112 AT3G56630 225 / 4e-71 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.009G145400 [exp] 337 / 3e-110 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036024 pacid=23141121 polypeptide=Lus10036024 locus=Lus10036024.g ID=Lus10036024.BGIv1.0 annot-version=v1.0 ATGCTGCAGCTGCTTATCACCTTGTTCCTCCCACTTCTGCTAATCTTCATCTTCGCTGCATCATCATCATCATCAACCAAGAACCCATGTCCAGATTCCT ACCCACTCATCGGCAACATAATCGCTTTCCTCCTTAACTACCACCGCTTCCACGACTGGGTCACCGATATGCTCTCCACCACCCCTACCTCATCTCTCCA AGTCAACTCTTTCCTCAACATCTCCAATGGTGTCGCTACCTCTAACCCTGCCAACATCCAGCACATCCTCCTCACCAACTTCTCCAACTACATCAAAGGC TCTCGCTTCCACACCGTCCTTGACGATTTCCTCGGCGATGGGATTTCCAATGCCGACGGCCACATCTGGACCTTACAGAGGAAGATTGCTAGTCACGAGT TCAGCACCAGGTCTCTCAAGCTCTTCATCTCAGACGTCGTCCATTCTGAAGTTTCTGACCACCTCTTGCCTTTCCTCGACCGAAAGTCTTCATCTGAAGA AGAAGATAAGGTTTTCGATCTCCAGCAAGTGCTGCAGAAGTTTGGCTTCAGGAGCATCTGCAGAGTGGCATTCGGCGTTGAAGATCCTGAATCGATCATC CCGAATCTCGATCTCATGAAATCCTTTGATGTCGCTGTGGATAACTGCTTCTCCAGAGTTGCTTCCCCTTTCCCGACGTATTGGAAGCTCAAGAGGTTCT TCAATCTCGGATCGGAGAAGCATTTCAGAGAATCCATCAACAACATCAACGAATTCGCTTTCCGTGTCATCAAATTGAAGGAAGAGAAGAGCGATAAGAA TCATCATCAACAACAGCAAGATCTCCTATCGAGATTCATGGTTTGGAGCTCGGAAATGGAGTGGGGGAACCAAGAGGAGGAGGAGGAGGAGAAGAAGCAC AAGTTCCTTAGGGACATTGTGATCAGCTTCATGTTAGCAGGGAAGGACACGACTTCAACAGCACTGACATGGTTCTTCTGGCTCATCGCCGGCAATCCAC GTTGTGCGGAGTTGATCCACAGGGAGCTATCTGCTGTGGCGGCGGAGGAAGAAGAGCCGTCGTTGGAGAAAAGATACAGATTTGGGTACGATAAACTAAA GAAGCTAGATTACGTGCATGCAGCTGTATCAGAGTCAATGAGGCTGTTCCCGCCGGTTCCGTTGAATTCGAAAGTGGCGGTGGAAGATGATGTGTTGCCG GACGGAACCCAGGTGAGAAAAGGAATGTTTGCTGATTACTCTGCTTACGCGGTGGGTAGGAACGAGAAAGTGTGGGGCCCGGATTGCTTGGAGTTCAAGC CGGAGAGATGGTTAGTGGATGAAGAAGAGGGAGGAAGATGGTATAAGGCGTTTGATCAGTTTAAGTATCCGGTGTTCCATTGTGGGCCGAGGATGTGTTT GGGGAAGGAGATGGCTTATATACAGATCAAAGCTATCGTAGCGGCGGTGATGATGGAATTCCAAGTGTTGCCGGTTGATGGAGGTGCTTCTGCAGATAAG ATGTTGAACCCTCCTTACAACTTATCGTTGTTACTCAAGATGAAAGGTGGGTTGCCCGTTACAGTAAGGAGAAGACAGAGGATCAACTAA
AA sequence Show only first row Show all	>Lus10036024 pacid=23141121 polypeptide=Lus10036024 locus=Lus10036024.g ID=Lus10036024.BGIv1.0 annot-version=v1.0 MLQLLITLFLPLLLIFIFAASSSSSTKNPCPDSYPLIGNIIAFLLNYHRFHDWVTDMLSTTPTSSLQVNSFLNISNGVATSNPANIQHILLTNFSNYIKG SRFHTVLDDFLGDGISNADGHIWTLQRKIASHEFSTRSLKLFISDVVHSEVSDHLLPFLDRKSSSEEEDKVFDLQQVLQKFGFRSICRVAFGVEDPESII PNLDLMKSFDVAVDNCFSRVASPFPTYWKLKRFFNLGSEKHFRESINNINEFAFRVIKLKEEKSDKNHHQQQQDLLSRFMVWSSEMEWGNQEEEEEEKKH KFLRDIVISFMLAGKDTTSTALTWFFWLIAGNPRCAELIHRELSAVAAEEEEPSLEKRYRFGYDKLKKLDYVHAAVSESMRLFPPVPLNSKVAVEDDVLP DGTQVRKGMFADYSAYAVGRNEKVWGPDCLEFKPERWLVDEEEGGRWYKAFDQFKYPVFHCGPRMCLGKEMAYIQIKAIVAAVMMEFQVLPVDGGASADK MLNPPYNLSLLLKMKGGLPVTVRRRQRIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Lus10036024 [exp]	0	1
AT3G27210			unknown protein		Lus10035217 [exp]	5.1	0.8199
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	11.2	0.8103
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	13.4	0.8060
AT2G25280			unknown protein		Lus10001925 [exp]	13.6	0.8086
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	21.2	0.7931
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	24.3	0.8038
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10022690 [exp]	24.9	0.7174
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	28.4	0.7648
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	30.0	0.7916
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	30.6	0.7975

Compare expression of checked genes

Lus10036024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.