Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14590 458 / 4e-151 EMB2739 embryo defective 2739 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015604 [exp] 785 / 0 AT4G14590 496 / 3e-172 embryo defective 2739 (.1) Lus10009705 [exp] 462 / 1e-155 AT4G14590 214 / 7e-66 embryo defective 2739 (.1) Lus10032903 [exp] 100 / 4e-23 AT4G14590 79 / 1e-16 embryo defective 2739 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G277200 [exp] 986 / 0 AT4G14590 533 / 4e-180 embryo defective 2739 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10189 [flax] [poplar] Ints3 Integrator complex subunit 3
Representative CDS sequence Show only first row Show all	>Lus10036025 pacid=23141211 polypeptide=Lus10036025 locus=Lus10036025.g ID=Lus10036025.BGIv1.0 annot-version=v1.0 ATGGAACCAGTGCTGCAGAATATTGCTTCTCACGAAGCAACAAACGAGTTCGAATCTTTGTTAAGGCAAGCTTTCAAGGAGGTTGAATCGAAACTAAGGC CGCCATTTTCTATAACAATCCCAACTCTGTCTGAATACGCCCAACTTAATCATGCTATTCTTTACGGGGTCTTAACCGAACCACAGCTTGCCAAAATTCA TATCAAGCATCTTCACGGCATTGTCTCCGATGGGTATGCCCGTTTTGTTGGTTTAGTTCTGAAAGTTGTTGAGTTGTACTCCAGGCTTATTGATTCTGTG AAAGCACAGGTGATTTGGGTTGTTAAAGAAATGGTTGATGTGCTAGGAGTTGGTGTTGATGGCTTGTTAGTTGGTTTGTTAAGGGAAATTATTGGTGGGG ATTACAGTGAAAGGAGCTTGTGGTTTTGTTTTATGTTAGTCAACCTCTTCTTGGAAAAATTCGATTCTTTACTTGAAGAAGAACCGTTGGTGTTGACGAG CGCATTATATGTGTATCTTCGGTTGCTGGCTGATCAATGTAGGGTTTCAGACAATATGATATTAGACTTGTTGAAGCGATTAGAAATTGAGTTTTGCATC AAGATGTTGAGACAGCATTTCCAGTTGAGTATGAAGATTGGGAGGGACCTTGTTAGGTTGCTTCAGGATTTGGTTCATGTCCCAGAGTTCCGGGATGTTT GGAAGGATTTAGTTATGGATCCAAGTCAGTTTAGAACTGAGGGGTTTACAGATATTTCACAATTGTATGGTTGTAGGACCTCAAGTCGGTACTTTTTGCT TCGAATCAGCCCAGATATGGAAAAGCAATTGAGGTTCTTACTTGTTCATGTCAAGTTTGGTCATCAGAAGCGGTATCAATTGTGGTTTGCAAAGAAGTTT ATCTCCGGGCCAGATAGAGAGACTCTTGTAGTTGATATCATCCGTTTCATATGTTGTGCACATCACCCATCTAATGAAATTCTTCAATCTGAAGTAATAC CAAGTCGCGCTGTTTTAGGTTGGCTTCTAAGCTCTTGTAGGAAGAGATATGTTGAAGCCAATGCAAAGCTGGCCTTATTTTACGATTGGCTTTTCTTTGA CGAAAGAGGAGATAATGTGATGAATATTGAGCCTGCAATGCTGTTGATGGTGTGTTCCTTGCCGCAGTATATTGGCATGACTCAATCACTTTTGGAAATT TTGTTGCTTCTTGTTGACAATTATGATCCGGATCGTATTCATATTGTTGCAAAGGGAGTTTCAACAGCTTTCAGTAGTCTTGTTCAGAAAGGTGTTGTAC GTTCTATGGATGTTCTGACATCTTGTGATGCCCTGGCACCCTTTTTGAAAGAAAGACTTAAAAAGTTACTGTTGAGAGTAAATGAGGCAGACCCTTATCA GTTACACCCATGCCGTCTTCCTAATTCTTCTGTGGTGGCCTTGAATCTATCCCATGTTTCTCATCGGGACACTTCGATATCATCCGTAGAGCATGAACCT GCAAGTGTTTTAGAGCCAAGTTGTAGCAAAATTGGTACTGAATCAGAACCAGGTAATTCTACTTGTTCCACTTTCCTAGTTTCAAACATGCAAACTACTT CAGCTCTGGAGACCCCTACACCATCCCCTAAACATCAACCTTCGCAATTAGTTGCTGCTGCTGAAAGCCAGTCAGATCCTGATCCCATTAAAAATTTGTT AGAACATTGGATAAATGCTATAAAGAACTCCAGTGGGTCATGCACTGAGATTTTCGAGGCAATACTTCTTTCACTTGGAAATGTTGAAGAAGAAGAAGAA GAAACACCTGGATCTGGTTCAGTATCTCCGGAAATTTTGTGTACAAGGCTAGACGACGCATTGCAATCAGTTGATTACAGTTTTTTTAATCCCCTTAATG TAGATGCTGCTATTCCTTGTGATGACAATGATATTAAATCTTTGACAACTCTCACTGTGCGTAGCTTCATACTTTTTCGGCATGTAAAGCTACAAAGGAT GCTTATGTTCTGGTCAAGGAAGGGTGCCCCTGTAGGTGCACATATACTGTTCTATGCGTCCCAATTAGCATATGATGCTCATATAGCTGCTTGCTCGGAG AATGGCTTGATTGATTTAGGAAGTCATCCAGGGACATCATTATTAAACTTTCATCTCAACGGTCTAGATTGCAGAAAGCAGAGTTCTTCGCAGGTTTCTC TGTCTCCTTCTAAACCTGATAGAAACTTGATTGAGGAGTTGGTAAGAAAGGCTTTTGTTGCGTACAAATGTTTCCGGATGTGTTCAAAATACCTCTTTTC AGATATAGTAATGTGCTTGGGTTGGGAAAGGAAAAGAGCGAAGCCCTTATTTTCAAACATTTTTCATCATCTAGCTGATATATGTGTTTGTGCAGTGGAT ATTGCCAGGTTACTTGTAAGTCAGTTGGATCATGTTGATCTTGTTAATCTGCAGTTAGAGATTGGGTTAAAGAAAATATCTTTGTTTGGGGAGGATGTTC GGTCTATAGTCAACTTGATAAAGGACTCTCTCACTTGGGATCACTTGGAGCAGCATAAGTTGTGGGGACTATTAAGATCAGAACTTGCAGTGTCCAAAGT TCAAGTTGCGAATATCATCTTAGCTTTCTTTTTCTGCAGCGAATTGAATCTTGATAGTGCTGCAGTAGCTGCTGGAGGCCTTCTTGCACTGTGTAGTTCT CTTGCACCCACACCAGAGCTTGTAGGTGCAATTATGTTGCTTCCTAATAGTGTGTTCCCAGAATTTTCTGCTGTTGCTTTATCAACTTGGGCTGCATCTA GTACGTCAATGCTCATTGATAGCTTAACTATGTTTATAGAGAGATCTGAGAACAAAAACAAGAATGAAATCAGTTCAGCTAGGACTGAATTTAACCAATC TGGCATTCTCTGGGTACTGAATTATTTTAGCGAACGAGGGATAGATGCATCCAGTGCTTTTAGTATCCTTTCGCTCGAGGGCCCTTGCAAGAAAGGATTA TAG
AA sequence Show only first row Show all	>Lus10036025 pacid=23141211 polypeptide=Lus10036025 locus=Lus10036025.g ID=Lus10036025.BGIv1.0 annot-version=v1.0 MEPVLQNIASHEATNEFESLLRQAFKEVESKLRPPFSITIPTLSEYAQLNHAILYGVLTEPQLAKIHIKHLHGIVSDGYARFVGLVLKVVELYSRLIDSV KAQVIWVVKEMVDVLGVGVDGLLVGLLREIIGGDYSERSLWFCFMLVNLFLEKFDSLLEEEPLVLTSALYVYLRLLADQCRVSDNMILDLLKRLEIEFCI KMLRQHFQLSMKIGRDLVRLLQDLVHVPEFRDVWKDLVMDPSQFRTEGFTDISQLYGCRTSSRYFLLRISPDMEKQLRFLLVHVKFGHQKRYQLWFAKKF ISGPDRETLVVDIIRFICCAHHPSNEILQSEVIPSRAVLGWLLSSCRKRYVEANAKLALFYDWLFFDERGDNVMNIEPAMLLMVCSLPQYIGMTQSLLEI LLLLVDNYDPDRIHIVAKGVSTAFSSLVQKGVVRSMDVLTSCDALAPFLKERLKKLLLRVNEADPYQLHPCRLPNSSVVALNLSHVSHRDTSISSVEHEP ASVLEPSCSKIGTESEPGNSTCSTFLVSNMQTTSALETPTPSPKHQPSQLVAAAESQSDPDPIKNLLEHWINAIKNSSGSCTEIFEAILLSLGNVEEEEE ETPGSGSVSPEILCTRLDDALQSVDYSFFNPLNVDAAIPCDDNDIKSLTTLTVRSFILFRHVKLQRMLMFWSRKGAPVGAHILFYASQLAYDAHIAACSE NGLIDLGSHPGTSLLNFHLNGLDCRKQSSSQVSLSPSKPDRNLIEELVRKAFVAYKCFRMCSKYLFSDIVMCLGWERKRAKPLFSNIFHHLADICVCAVD IARLLVSQLDHVDLVNLQLEIGLKKISLFGEDVRSIVNLIKDSLTWDHLEQHKLWGLLRSELAVSKVQVANIILAFFFCSELNLDSAAVAAGGLLALCSS LAPTPELVGAIMLLPNSVFPEFSAVALSTWAASSTSMLIDSLTMFIERSENKNKNEISSARTEFNQSGILWVLNYFSERGIDASSAFSILSLEGPCKKGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10036025 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001951 [exp]	6.5	0.8182
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	15.4	0.8494
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	18.5	0.8360
AT3G22270			Topoisomerase II-associated pr...		Lus10039002 [exp]	22.0	0.8340
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	28.0	0.8391
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	35.5	0.8138
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	37.7	0.8339
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	41.8	0.7899
AT5G24340			3'-5' exonuclease domain-conta...		Lus10022376 [exp]	42.0	0.7896
AT5G62960			unknown protein		Lus10042109 [exp]	49.0	0.7880

Compare expression of checked genes

Lus10036025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.