Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30520 436 / 2e-150 AAE14 acyl-activating enzyme 14 (.1) AT4G19010 134 / 1e-34 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 134 / 2e-34 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT3G21230 130 / 4e-33 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G20480 128 / 2e-32 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 127 / 4e-32 AMP-dependent synthetase and ligase family protein (.1.2) AT1G21540 125 / 2e-31 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 123 / 1e-30 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G77240 122 / 1e-30 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 122 / 2e-30 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009704 [exp] 295 / 2e-100 AT1G30520 174 / 5e-52 acyl-activating enzyme 14 (.1) Lus10015998 [exp] 136 / 4e-35 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 134 / 9e-35 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10039161 [exp] 132 / 4e-34 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10012280 [exp] 133 / 8e-34 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 131 / 2e-33 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 129 / 9e-33 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 129 / 1e-32 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 126 / 7e-32 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164100 [exp] 494 / 6e-173 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1) Potri.013G096200 [exp] 133 / 3e-34 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G049500 [exp] 132 / 8e-34 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.006G169700 [exp] 131 / 1e-33 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G067900 [exp] 129 / 1e-32 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 127 / 2e-32 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 125 / 2e-31 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 125 / 2e-31 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.018G094200 [exp] 125 / 2e-31 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.017G112800 [exp] 125 / 2e-31 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10036027 pacid=23141200 polypeptide=Lus10036027 locus=Lus10036027.g ID=Lus10036027.BGIv1.0 annot-version=v1.0 ATGGCTTTAGGAACCACCGGAAAGCCAAAGGGTGTTGTAATAAGCCATTCTGCACTGATTGTACAGTCCTTGGCCAAAGTTGCTATTGTTGGTTACTCCG ATGATGATGTTTATTTGCACCTCGCTCCACTTTGCCACATTGGAGGATTATCATCAGCCTTGGCTATGTTGATGGTTGGAGCTTGTCATTACCTGATACC CAAATTCGAAGTTGCTGTGGCCATTGATATTATGGAGAGACACAATGTGACTTCTTTTATCAGTGTCCCCGCGATATTGGTTGATTTGCTATCCTTCATA AAGATGAAGGAAAACTGGACAGAGAGACACTCAATTAAGAAGATTTTAAATGGAGGTGGGAGCCTTACAGCTGAAATCATTCAACAAGTTGCCACATTCT TCCCCCAAACAAAGCTATTTTCAGCATATGGAATGACAGAGACCTCTTCCTCATTAACGTTCATGACTCTCTACAATCCATCGCTTCAAACCTCTCATCA GCATATGCAGATATCTGGGTTGACGGAACCACAAGGTGTCTGCGTCGGCAAGCCCGCTCCACATGTCGAGTTAAGTGTACGTCAGTGTGGCTCCTCCGCA AGTGGAACAATTTTAACCAGAGGCCCTCACGTTATGATGGGATATTGGGATCAATACACTTCCAAGGAATTGCATTCTACCAATGATGTTTGGCTCGACA CTGGTGACGTTGGTTCCATTGATCAAAGTGGCAATCTGTGGCTCCTTGGACGCATGAATGATCGAATAAAGAGTGGTGGTGAGAATGTTTACCCTACCGA GATAGAGGCCGTCCTCTTACAGCATCCAGGAGTTATCCGTGCGGTGGTTGTGGGAATTCCAGATGCTCGGTTGGGAGAGCAGGTCATTGGTTGTATTCAA TTACGAGAAAGCTGGCAATGGTCCGATCCTTGTTGTGCAGCAGGACATGGTGGAAGTAAGGAAGATATATGTAGCGAGGCTTTGAAGAAGCATTGCAGAG CAAAGAATTTAACAGGGTTTAAAGTACCAAGAAAATTCATCTGGTGGAGGGATCATTTTCCGTGTACGTCGACGGGAAAGATAAGAAGAGATCAAGTTAG AACAAAAGTCATGCTTCATCGGTTTCATTCTGTGTCCAGCAACCTCTGA
AA sequence Show only first row Show all	>Lus10036027 pacid=23141200 polypeptide=Lus10036027 locus=Lus10036027.g ID=Lus10036027.BGIv1.0 annot-version=v1.0 MALGTTGKPKGVVISHSALIVQSLAKVAIVGYSDDDVYLHLAPLCHIGGLSSALAMLMVGACHYLIPKFEVAVAIDIMERHNVTSFISVPAILVDLLSFI KMKENWTERHSIKKILNGGGSLTAEIIQQVATFFPQTKLFSAYGMTETSSSLTFMTLYNPSLQTSHQHMQISGLTEPQGVCVGKPAPHVELSVRQCGSSA SGTILTRGPHVMMGYWDQYTSKELHSTNDVWLDTGDVGSIDQSGNLWLLGRMNDRIKSGGENVYPTEIEAVLLQHPGVIRAVVVGIPDARLGEQVIGCIQ LRESWQWSDPCCAAGHGGSKEDICSEALKKHCRAKNLTGFKVPRKFIWWRDHFPCTSTGKIRRDQVRTKVMLHRFHSVSSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	0	1
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	1.7	0.9371
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	2.0	0.9517
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	2.0	0.9478
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	6.5	0.9286
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	6.7	0.9179
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10016622 [exp]	7.3	0.9113
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10032000 [exp]	11.8	0.9152
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	12.0	0.9297
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	13.3	0.9366
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	13.4	0.9004

Compare expression of checked genes

Lus10036027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.