Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 61 / 6e-11 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT5G40380 61 / 9e-11 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT5G48540 49 / 7e-07 receptor-like protein kinase-related family protein (.1) AT1G19090 48 / 2e-06 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70530 46 / 7e-06 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT4G28670 45 / 2e-05 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT5G37660 44 / 3e-05 PDLP7 plasmodesmata-located protein 7 (.1.2) AT4G23230 42 / 0.0001 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT3G60720 42 / 0.0002 PDLP8 plasmodesmata-located protein 8 (.1) AT4G23160 42 / 0.0003 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009703 [exp] 353 / 3e-119 AT1G70520 319 / 4e-100 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10010960 [exp] 123 / 2e-32 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 63 / 3e-11 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10013039 [exp] 61 / 1e-10 AT1G70520 699 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 61 / 1e-10 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10013040 [exp] 59 / 7e-10 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029122 [exp] 57 / 3e-09 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10030901 [exp] 53 / 5e-08 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10020814 [exp] 52 / 6e-08 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276600 [exp] 172 / 4e-50 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.017G141300 [exp] 161 / 1e-45 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 154 / 3e-43 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043700 [exp] 72 / 1e-14 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043800 [exp] 72 / 2e-14 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 56 / 6e-09 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.010G043900 [exp] 54 / 1e-08 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.004G024228 [exp] 54 / 2e-08 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G030000 [exp] 54 / 2e-08 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024101 [exp] 54 / 3e-08 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10036028 pacid=23141010 polypeptide=Lus10036028 locus=Lus10036028.g ID=Lus10036028.BGIv1.0 annot-version=v1.0 ATGAACGACGAAGTAACAACATGGCCCACAACCAGAAGCATCCTGGTTTTCTACATATTTCTGAATTGGGGATTACTGATCAAGACAGCAGCTTCTGACC CAGAAATCAATCTGCTGAGTGTCGGATGTAGCCAATATAAAGATGGCGACTTGCATATTTCTAGAGGCAACCTGAAATCAAGCTTCTCTCAGCTCAGAGC TCAGTTGAATGGTAGTAGCAGCAAGTATTTCGCAACAGCACAGCAAACTTCTGGTCAGGAACCCGTTTACACGATGGGTCAGTGCAGGAATTACATGTCC AAACCCGATTGCCTCGCTTGCTTTGACGACGCTGTTGCCAGAATCCTCAATTTCTATTCTGCCAATGGTGCCCGTGTGATCTTGGATGGTTGCTTCCTCA GGTATGAGAGGAACACTTTCTATGACCAGAGCACTCAGGATGGCCACAGTGGGGTTTCTGGGAATCAGACCATATCCACGCAGGATAACAATTATGGCAC TGCTCGGGAAGATCTTCTGTTGAATCTTGTTATTGCCACACCCAAACTGAATGGCTTTTATGCAGCAAGCAAAAAGGAAGTGGTAGCTGCTGCTGCTGGT AATCTTTTTTATGCTGTTGAAACTGTCGGCCAGATTGGTTGCAGGATTGCTTAA
AA sequence Show only first row Show all	>Lus10036028 pacid=23141010 polypeptide=Lus10036028 locus=Lus10036028.g ID=Lus10036028.BGIv1.0 annot-version=v1.0 MNDEVTTWPTTRSILVFYIFLNWGLLIKTAASDPEINLLSVGCSQYKDGDLHISRGNLKSSFSQLRAQLNGSSSKYFATAQQTSGQEPVYTMGQCRNYMS KPDCLACFDDAVARILNFYSANGARVILDGCFLRYERNTFYDQSTQDGHSGVSGNQTISTQDNNYGTAREDLLLNLVIATPKLNGFYAASKKEVVAAAAG NLFYAVETVGQIGCRIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	0	1
AT3G09470			Major facilitator superfamily ...		Lus10003979 [exp]	3.0	0.7375
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	6.0	0.7077
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10021912 [exp]	7.5	0.6216
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	8.5	0.6876
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	10.9	0.7187
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	15.0	0.6682
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	21.0	0.6791
AT2G37370			unknown protein		Lus10025285 [exp]	21.1	0.6921
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	21.6	0.6262
					Lus10002304 [exp]	24.5	0.6937

Compare expression of checked genes

Lus10036028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.