Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27110 561 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 339 / 7e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 336 / 6e-108 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 340 / 2e-107 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 334 / 6e-106 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G34400 321 / 5e-103 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G33170 328 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 316 / 5e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 315 / 3e-99 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 322 / 4e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009702 [exp] 593 / 0 AT5G27110 409 / 1e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 346 / 1e-109 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 338 / 1e-108 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 340 / 7e-108 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 339 / 3e-107 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 331 / 3e-105 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 327 / 3e-105 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015225 [exp] 330 / 1e-103 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 331 / 1e-102 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 355 / 3e-115 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 359 / 8e-115 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 350 / 2e-113 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 343 / 4e-111 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 341 / 2e-109 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 340 / 2e-109 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 341 / 1e-108 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 335 / 7e-108 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G018700 [exp] 339 / 3e-107 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 333 / 7e-107 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036029 pacid=23141270 polypeptide=Lus10036029 locus=Lus10036029.g ID=Lus10036029.BGIv1.0 annot-version=v1.0 ATGAGGAGACTTGGAATTGAGCCGAACTCTGTTACGTTAACCATTGTTATTTCTGCCTGTGCTAGACTTTTGGATTTGGAAATGGGGAAGCGTATTCATA TGGAATTGATGAGAACTGGGTTTGTGTTTGATGATTTGGTGAGTGCTGCTCTAGTTGAATTGTATGGAAAATGTGGTTGCTTGGAGATGGCCAAAACTGT TTTTCAGCAGATGCCCAAAAAGACCATAGTTGCTTGGAATTCCTTGATTTCAGCACATGGCTTAACAGGTGACTGTAATCAATGTATTGAACTTCTCAGG ATGATGAGTGAGGAAGGTGTTAGACCGACTCTGTCCACTTTGAGTACCATCTTGATGGCCTGTTCAAGATCTTCACAACTTCAACTTGGATCATTTGTCC ATGGATACATATTGCGGAACGGAATTGTTGGTGATGAGTTCATCAATAGTGCCCTTATTGATCTATATTTCAAATGTGGAAGACCTCAGTTCGCTGAAAA TGTATTCAGATTCATGTTAAGGCCGGAAATAGTTCACTGGAATGTGATGATTTCCGGATATGTGACAGTTGGAAGGTACTTTGAGGCTCTTAACATTTAC AGTCAAATGGATGTGGCAGGCGTGAAGCCAGATGCTATGACATTTTCGAGCACTTTATCAGCTTGTGCGCAGTTAGCAGCCTTGGAACAGGGCAAACATA TCCATGGTTCCATTTCTGAGAATGGACTGGAAAACAATGAAGTAGTTATGGGGGCTCTGATGGACATGTATTCTAAATGTGGCGAAATAAATGAAGCTTT CAACATATTTTGCAAGTTGCCAGTCAGGGACCTGATATCTTGGACGTCCATGATTACTGCGTATGGTTCACACGGGCAAGCTAGAGAAGCTCTAAAGCTC TTCAATGAAATGGAGTCGGCTAATGTGAAGCCAGATGGAGTTACTTTCCTTGCAGTTTTATCAGCCTGTAGCCATGCAGGATTAGTTGACGAGGGTTTCT ATTATTTCAGACGAATGATCAATGAATACAATCTCCAGCCCAAGTATGAACATTACTCGTGTTTGATTGATCTTCTTGGGCGCGTTGGGAAGGTGCATGA AGCTTATCATGTTCTCCAAACAAATCCAGAAATTAGAGATGATGTTGAACTGTTAAGTTCAATATTCTCAGCCTGTTGCTTGCACAAGGAAGTTGAACTG AAAGAAGAAATCACAAAGCTCCTTATTGAAAAGGATCCGGATGATCCCTCCACATATATTTCATTGTCCAACATGTATGCCTTTTCAAGCAAATGGAACG ACATGCGAAACATGAGACTAAGGATGAGGGAGTTGAGCATGAGGAAGAATCCTGGGTGTAGCTGGATTGACATTGATAACCGTATCACGATGTTCTTCGT GGAGGATATGGCGCATTGCAAATCGGAAGTTGTGCGTGAATGTCTCAGACATCTTTATTGTCACATAGAAAAGGATGAAAAGCTACAATATTCAGAGATC ATATTGAACTAG
AA sequence Show only first row Show all	>Lus10036029 pacid=23141270 polypeptide=Lus10036029 locus=Lus10036029.g ID=Lus10036029.BGIv1.0 annot-version=v1.0 MRRLGIEPNSVTLTIVISACARLLDLEMGKRIHMELMRTGFVFDDLVSAALVELYGKCGCLEMAKTVFQQMPKKTIVAWNSLISAHGLTGDCNQCIELLR MMSEEGVRPTLSTLSTILMACSRSSQLQLGSFVHGYILRNGIVGDEFINSALIDLYFKCGRPQFAENVFRFMLRPEIVHWNVMISGYVTVGRYFEALNIY SQMDVAGVKPDAMTFSSTLSACAQLAALEQGKHIHGSISENGLENNEVVMGALMDMYSKCGEINEAFNIFCKLPVRDLISWTSMITAYGSHGQAREALKL FNEMESANVKPDGVTFLAVLSACSHAGLVDEGFYYFRRMINEYNLQPKYEHYSCLIDLLGRVGKVHEAYHVLQTNPEIRDDVELLSSIFSACCLHKEVEL KEEITKLLIEKDPDDPSTYISLSNMYAFSSKWNDMRNMRLRMRELSMRKNPGCSWIDIDNRITMFFVEDMAHCKSEVVRECLRHLYCHIEKDEKLQYSEI ILN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10036029 [exp]	0	1
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	8.4	0.8679
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	14.7	0.8186
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	20.0	0.7861
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	22.4	0.7835
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	22.8	0.8504
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	24.5	0.8148
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	28.8	0.8115
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	34.1	0.8166
AT3G49990			unknown protein		Lus10015447 [exp]	37.0	0.7969
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10025942 [exp]	37.5	0.7886

Compare expression of checked genes

Lus10036029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.