Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 1542 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 1500 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 949 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 936 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 916 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 782 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 717 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 646 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 484 / 1e-153 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 186 / 9e-51 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009701 [exp] 1831 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 1235 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 1162 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10018904 [exp] 950 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 945 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10016335 [exp] 923 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 918 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10029772 [exp] 913 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 900 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071800 [exp] 1669 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 1598 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1369 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 1367 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 1353 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 991 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 845 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 806 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 635 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 547 / 6e-177 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10036030 pacid=23141046 polypeptide=Lus10036030 locus=Lus10036030.g ID=Lus10036030.BGIv1.0 annot-version=v1.0 ATGTCGCGTACTGATAGGATGGCTGCGGATCTCAGTAGACTGGGTCCTGCAGAAAGGGACATTGAGCAGGCCATCACTGCTCTGAAGAAAGGCGCTTATT TGCTGAAGTATGGAAGAAGGGGAAAGCCAAAATTTTGTCCCTTTCGTCTTTCCAACGATGAGTCTCTTTTGATTTGGTTCTCAGGGAAAGAGGAAAAACA TCTCAGATTAAGTCACATATCTAGAATTATCTCTGGCCAACGCACTCCAATCTTTCAGAGGCATCCACGTCCTGAGAAGGAATACCAATCATTTTCTCTT ATATATAATGACAGGTCTCTGGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTGTGGTTTAGTGGTTTGAAAGCATTAATCTCACGCAGCCATAACC GGAAAGGTAGATCAGAATCAAGAAGTGATGGAATTCCATCTGAACTAAGCAGTCCTAGGACATATACTCATAGAAGTTCTCCACTGAATTCTCCATTTGG AAGTAATGAGAGTTTCCAAAAGGATGGAGATAACCTTCGTCTTCATAGTCCATATGGAAGTCCGCCCAAGAATGGACTAGATAAGTCTTTTTCCGATGTT ATATTTTATGCTGTTCAGCCAAAAGGGGTGTTTCCATCAGATTCGGCTAGCGCTTCGGTCCATTCATTGTCATCTGGAGGCTCAGATAGTATGCATGGTC ATACAAAGGGAATGGGGATGGATGCTTTTAGAGTTAGCCTATCTAGTGCTGTCAGTTCTTCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCCTAGG GGATGTTTTCATTTGGGGTGAAGGAACAGGAGAAGGTGTCCTAGGTGGAGGAGGTCATAAAGTTGAGAACTGTATTGGAGCAAAAATGGATTCATTGTTG CCTAAACCTTTGGAATCTACCGTTGTACTTGATGTCCAGAACATTGCCTGTGGCAGCCGTCATGCAGCATTAGTGACTAAGCAAGGTGAGATTTTCTCCT GGGGGGAGGAATCAGGAGGCCGACTTGGGCATGGTGTTGATGCCGATGTCATGCATCCAAAACTCTTAGATGCTCTTAGCAATGCAAACATTGAACTAGT GGCTTGTGGTGAATATCATAGTTGTGCTGTAACACTTTCTGGTGATTTGTATACATGGGGTGATGGAACATACAATTTTGGTCTTCTTGGACATGGAAAT GTCGTTAGTCACTGGGTTCCAAAGAGGGTTAATGGACCTTTAGAAGGCATACATGTATCGTCGATCTCCTGTGGACCATGGCATACAGCAATCGTAACTT CTTCTGGGCAATTATTTACATTTGGTGATGGAACATTTGGAGTTCTAGGTCATGGAGACCGGAAAAGTGTCTCATTGCCGAGGGAAATAGAATCCCTCAA AGGGCTCAGAACAGTACGAGCAGCATGTGGTGTTTGGCATACAGCTGCAGTTGTAGAAGTCATGGTCGGTAATTCGAGTTCTAGCAATTGTTCTTCAGGT AAGTTGTTTACTTGGGGAGATGGAGATAAGGGAAGACTTGGGCATGGTGACAAGGATACCAAACTTGTTCCTACTTGTGTTGCTGCTCTGGTTGACCCCA ACTTTTGTCAAGTTGCATGCGGGCATAGTCTAACAGTTGCACTTACAACCTCGGGTCATGTCTACACTATGGGTAGTCCTGTTTACGGTCAACTAGGGAA CCCAAAAGCGGATGGGAAGCTCCCAACCCGAGTGGAAGGGAAGCTCTCAAAGAATTTTGTTGAGGAGATTGCTTGTGGAGCATATCATATTGCAGTTTTG ACTTCCAAAACTGAAGTTTATACTTGGGGCAAGGGAGCCAACGGTAGATTGGGTCATGGAGATATGGATGACAGAAATTCTCCAACGCTGGTGGAAGCCT TAAAAGACAAGCAAGTCAAAAGCATTGCATGTGGTGCTAATTTTACTGCAGCTATTTGCCTTCATAAATGGGTGTCAGGTATTGACCAGTCTATGTGTTC TGGTTGTCGGCTTCCATTTAACTTCAAGAGAAAACGGCACAAATACTATAATTGTGGACTAGTTTTCTGCCATTCATGCAGCAGCAAGAAGTCTCTTAAA GCTTCTATGGCACCAAATCCACACAAACCTTATCGTGTATGTGATAATTGCCTTAACAAACTTAGGAAAGCCATGGATACTGATAAATCATCTCATTCCT CAATCAGTAGAAGAGGTAGTATAAATCACGGGTCTAATGAGTTTACTGATAAAGATGAGAAGTTGGATTCAAGGTCCCGAGCCCAGCTTGGTAGGTTTTC ATCGATGGAGTCTTTGAAGCAAGTAGACGCTCAAACCAAGAGAAACAAGAAACTAGAATTCAACAGTAGCCGTGTATCGCCGATACAAAATGGAGGCTCT CAGTGGGGAGGACTTAACATTTCGAAATCTTTAAATCCAATGTTCGGTTCATCCAAGAAATTCTTCTCTGCCTCAGTTCCTGGATCAAGAATTGTTTCTC GAGCAACATCACCCATCTCCAGACGACCTAGTCCACCTCGCTCAACTACACCGACACCAACCTTGGGTGGTCTCACTTCACCCAAACTAGTCGTTGATGA TGTAAAAAAAGCAAATGAAAGTCTCAGCCAGGAGGTTATTAAATTAAGAGCACAGGTAGAAAATTTAACTCGCAAAGCTCAGCTTCAAGAAACTGAGCTA GAACGAACAACTAAACAGCTTAAGGAAGCGATAGCAATTGCAGGAGAGGAAACTGCAAAATGCAAAGCAGCAAAGGAAGTAATCAAGTCACTCACTGCTC AACTGAAAGACATGGCGGAAAGACTACCCGTGGGAGCAGCAAAGAATTTGAAGTCAACTTCGTTTACTGCTTTTGGATACAGTCCTACAAATGAGACGCC AACCACCGATGCTGCTTCCGTGGAGCACTCGAATGGCCAATTTCCACCCCAAGAAGCGGACACACATGGGCTAAATAATAACCAAATAATCCCCAGAGGT GGCAGCACAACGAGTAGCTATAGTTCTGGTTACACCAATAAACAAGTAGACCCAACAACACTGAGAAACGGCGGAAGAACAAAGGATGGCGATGGTGCCG AATGGGTTGAACAAGATGAGGCTGGTGTTTATATTACACTAACCTCTTTGCCAGGCGGAGGCAAGGATCTCAAGCGTGTGCGCTTCAGTCGAAAAAGATT CACAGAAAAACAGGCAGAGCAGTGGTGGGCTGAGAACAGGGCAAGAGTATATGAACAGTACAATGTGAAAATGGTTGACAAGTCGAGTGTTAGTAGTGTT GGTGGCGAGGATTTGCCACGCTAG
AA sequence Show only first row Show all	>Lus10036030 pacid=23141046 polypeptide=Lus10036030 locus=Lus10036030.g ID=Lus10036030.BGIv1.0 annot-version=v1.0 MSRTDRMAADLSRLGPAERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWFSGKEEKHLRLSHISRIISGQRTPIFQRHPRPEKEYQSFSL IYNDRSLDLICKDKDEAEVWFSGLKALISRSHNRKGRSESRSDGIPSELSSPRTYTHRSSPLNSPFGSNESFQKDGDNLRLHSPYGSPPKNGLDKSFSDV IFYAVQPKGVFPSDSASASVHSLSSGGSDSMHGHTKGMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGEGVLGGGGHKVENCIGAKMDSLL PKPLESTVVLDVQNIACGSRHAALVTKQGEIFSWGEESGGRLGHGVDADVMHPKLLDALSNANIELVACGEYHSCAVTLSGDLYTWGDGTYNFGLLGHGN VVSHWVPKRVNGPLEGIHVSSISCGPWHTAIVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSG KLFTWGDGDKGRLGHGDKDTKLVPTCVAALVDPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPKADGKLPTRVEGKLSKNFVEEIACGAYHIAVL TSKTEVYTWGKGANGRLGHGDMDDRNSPTLVEALKDKQVKSIACGANFTAAICLHKWVSGIDQSMCSGCRLPFNFKRKRHKYYNCGLVFCHSCSSKKSLK ASMAPNPHKPYRVCDNCLNKLRKAMDTDKSSHSSISRRGSINHGSNEFTDKDEKLDSRSRAQLGRFSSMESLKQVDAQTKRNKKLEFNSSRVSPIQNGGS QWGGLNISKSLNPMFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKLVVDDVKKANESLSQEVIKLRAQVENLTRKAQLQETEL ERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAAKNLKSTSFTAFGYSPTNETPTTDAASVEHSNGQFPPQEADTHGLNNNQIIPRG GSTTSSYSSGYTNKQVDPTTLRNGGRTKDGDGAEWVEQDEAGVYITLTSLPGGGKDLKRVRFSRKRFTEKQAEQWWAENRARVYEQYNVKMVDKSSVSSV GGEDLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	0	1
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	1.0	0.9199
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	1.4	0.8751
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	2.0	0.8700
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	2.4	0.8720
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	3.5	0.8230
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	3.9	0.8620
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	4.0	0.8458
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	4.2	0.8569
AT3G51370			Protein phosphatase 2C family ...		Lus10041861 [exp]	9.2	0.7956
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	9.8	0.8144

Compare expression of checked genes

Lus10036030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.