Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12340 171 / 1e-53 unknown protein AT1G28190 69 / 5e-14 unknown protein AT1G21010 44 / 3e-05 unknown protein AT5G66580 41 / 0.0001 unknown protein AT1G76600 41 / 0.0003 unknown protein AT3G50800 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009698 [exp] 196 / 3e-63 AT5G12340 109 / 1e-29 unknown protein Lus10012442 [exp] 44 / 4e-05 AT1G76600 152 / 2e-46 unknown protein Lus10035664 [exp] 43 / 6e-05 AT1G21010 125 / 4e-36 unknown protein Lus10037249 [exp] 41 / 0.0003 AT1G76600 130 / 4e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276400 [exp] 225 / 8e-75 AT5G12340 191 / 2e-61 unknown protein Potri.009G071100 [exp] 218 / 4e-72 AT5G12340 187 / 4e-60 unknown protein Potri.003G160000 [exp] 100 / 3e-25 AT1G28190 168 / 4e-51 unknown protein Potri.001G070700 [exp] 99 / 7e-25 AT1G28190 150 / 2e-44 unknown protein Potri.012G045600 [exp] 47 / 1e-06 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 44 / 2e-05 AT1G18290 122 / 1e-35 unknown protein Potri.016G128800 [exp] 41 / 0.0001 AT3G03280 52 / 1e-08 unknown protein Potri.004G149800 [exp] 40 / 0.0003 AT5G66580 91 / 7e-24 unknown protein Potri.006G105600 [exp] 40 / 0.0004 AT3G03280 63 / 9e-13 unknown protein Potri.006G105500 [exp] 40 / 0.0005 AT3G03280 65 / 2e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036031 pacid=23141240 polypeptide=Lus10036031 locus=Lus10036031.g ID=Lus10036031.BGIv1.0 annot-version=v1.0 ATGGGGAACGCAATCTCCCCTTATCGTTGCTTCCGCCCGTGCTCGCCAAAGTTGGTCTCGCTCATCTTCTGGGACGGAACCACGACCACAACCACGACCG CGACGAAAACCAAGCTGATTGCCGGGGAGATAATGGTAAATAATCCCGACAAGGTGGTGTGCCACGCGGGCTCCTTCTACATCGGCCACCCGATCCCGGC CCTATCGATCCACGACGAGCTCTTGCCAGGTCAAACCTACTTCGTCCTCCCCATTGACAAATTCGCTTGTAAAACCCTAACTGCTTCCTTCCTCGCCTCG TTGGCTGTGACTAGAAGTAGCACTAGTGCGAACACTAAGCTGGTGATCAACTTCGGGGGATGCCAGCCGTTCGAGTACCTTAATGGTTCTAACGGTAGGG TTTTGATTAAAGTGGCGCCGGAGTTTATGATTAGGCTTGTCAAAAGTGGGAGGTCGGAAGAAGAAGAACAAGGGAATGGCAATGATGGTAATAAGGGCGG TGGTGAGGGGTTATTCCTCTGTAGCACTCCGGAGCTGAAGAAGCATTACGAGCAGCTGGTTGGGTGTAGAGAGCAGACGTGGTCGCCGAAGCTGGAGACG ATTTCGGAGTATAGAGTTCGCTACTCTCCTTGCCGGTTTATTGGTTTGGAGTGGAAACAGAAAGAAGAACGGTGA
AA sequence Show only first row Show all	>Lus10036031 pacid=23141240 polypeptide=Lus10036031 locus=Lus10036031.g ID=Lus10036031.BGIv1.0 annot-version=v1.0 MGNAISPYRCFRPCSPKLVSLIFWDGTTTTTTTATKTKLIAGEIMVNNPDKVVCHAGSFYIGHPIPALSIHDELLPGQTYFVLPIDKFACKTLTASFLAS LAVTRSSTSANTKLVINFGGCQPFEYLNGSNGRVLIKVAPEFMIRLVKSGRSEEEEQGNGNDGNKGGGEGLFLCSTPELKKHYEQLVGCREQTWSPKLET ISEYRVRYSPCRFIGLEWKQKEER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12340			unknown protein		Lus10036031 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	4.7	0.9483
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	5.3	0.9606
					Lus10027919 [exp]	5.7	0.9704
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	6.0	0.9591
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	7.7	0.9604
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	8.7	0.9594
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	9.6	0.9597
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	13.6	0.9483
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	14.1	0.9548
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024354 [exp]	15.0	0.9387

Compare expression of checked genes

Lus10036031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.