Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12330 192 / 7e-60 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT5G66350 146 / 4e-42 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT3G51060 145 / 2e-41 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT1G75520 144 / 6e-41 SRS5 SHI-related sequence 5 (.1) AT2G18120 122 / 6e-34 SRS4 SHI-related sequence 4 (.1) AT4G36260 121 / 9e-33 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT3G54430 111 / 3e-30 SRS6 SHI-related sequence 6 (.1) AT2G21400 110 / 4e-30 SRS3 SHI-related sequence3 (.1) AT1G19790 98 / 1e-23 SRS7 SHI-related sequence 7 (.1.2) AT5G33210 86 / 4e-21 SRS8 SHI-related sequence 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009697 [exp] 174 / 4e-55 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10028352 [exp] 132 / 2e-36 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10024305 [exp] 124 / 1e-33 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10003416 [exp] 123 / 5e-33 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10041802 [exp] 94 / 5e-23 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10017492 [exp] 71 / 7e-15 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1) Lus10028794 [exp] 55 / 5e-09 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10041803 [exp] 47 / 1e-06 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070800 [exp] 202 / 2e-63 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G276200 [exp] 197 / 2e-61 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 150 / 3e-44 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.003G196100 [exp] 142 / 4e-41 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.002G028500 [exp] 142 / 8e-41 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.005G234200 [exp] 137 / 8e-39 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.009G121600 [exp] 124 / 5e-35 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.005G118200 [exp] 124 / 2e-33 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 117 / 3e-32 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 119 / 1e-31 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10036032 pacid=23141184 polypeptide=Lus10036032 locus=Lus10036032.g ID=Lus10036032.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAGACGACGATAATCACCACAATCTGTTTCAACGCAAGATTGGTAGCAGCAGCAGTAGCGGGATTCAATTCTGGCAGCACTATAACAACA GCATCAAGAAGAATAATCCTCCCTCTTCTTCAATTCTCGATCCAAACAATAATACTAACAACAATAACAACAATAATAATAATCTGCCGCAAAGCACAGG AGTGGTGATGAATTCGATGATGGCCACGAGCTCTTCCTCGACGGCGACGTGTCAGGACTGCGGGAACCAGGCGAAGAAAGACTGTCCGCATAGGCGGTGT AGGACTTGCTGCAAGAGCCGCGGATTCGACTGTGCAACTCACGTGAAGAGTACGTGGGTCCCTTCCGCTAGGAGGAGGGAGCGCCAGCTCATGACGGCGG CTACTGCTGGCGGTGGTGGCTGCTCCTCCGCCTCTACTTCCGGCGTCAAGAAGCCTAGGCTCATCGGTTCCCAGACTACAGCCACCACTAATTCTCACAC TTCCACTTCCAACACCACTCCTTCTAGAAGCTACGACACCACCTCTAGCCATCATCATCAAGATGCGGGGTTTAGGGAGACGTTGCCGGGGCAAGTGAGG GCGGCGGCGGTGTTCAAGTGTGTTAGGGTGACGGCGGTGGAGGATGGGGAGGACGAGTACGCGTATCAGGCGGCAGTAAAGATTGGTGGACATTTGTTCA AGGGAGTTCTATATGACCAAGGCGTTGAAGGGAGAGGAGCAGATGGTAATTTCCCTGATGATGAATTATAG
AA sequence Show only first row Show all	>Lus10036032 pacid=23141184 polypeptide=Lus10036032 locus=Lus10036032.g ID=Lus10036032.BGIv1.0 annot-version=v1.0 MEGGDDDNHHNLFQRKIGSSSSSGIQFWQHYNNSIKKNNPPSSSILDPNNNTNNNNNNNNNLPQSTGVVMNSMMATSSSSTATCQDCGNQAKKDCPHRRC RTCCKSRGFDCATHVKSTWVPSARRRERQLMTAATAGGGGCSSASTSGVKKPRLIGSQTTATTNSHTSTSNTTPSRSYDTTSSHHHQDAGFRETLPGQVR AAAVFKCVRVTAVEDGEDEYAYQAAVKIGGHLFKGVLYDQGVEGRGADGNFPDDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Lus10036032 [exp]	0	1
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	1.4	0.9304
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	8.0	0.8872
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	15.0	0.8434
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	16.5	0.8366
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	19.3	0.8422
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	20.1	0.8644
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	21.6	0.8334
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	26.0	0.8598
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10041409 [exp]	26.0	0.8544
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	26.2	0.8623

Compare expression of checked genes

Lus10036032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.