Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) AT4G35450 76 / 8e-17 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT4G27780 73 / 1e-15 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 69 / 2e-14 ACBP1 acyl-CoA binding protein 1 (.1) AT4G19150 67 / 4e-14 Ankyrin repeat family protein (.1.2) AT2G17390 67 / 8e-14 AKR2B ankyrin repeat-containing 2B (.1) AT5G57740 66 / 3e-13 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G02620 64 / 2e-12 ATANK1, ANK1 ankyrin-like1 (.1) AT3G02850 61 / 2e-11 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G03430 59 / 3e-11 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009696 [exp] 300 / 3e-106 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10001414 [exp] 67 / 5e-14 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10013859 [exp] 68 / 9e-14 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 66 / 6e-13 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10020272 [exp] 65 / 1e-12 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10022382 [exp] 63 / 3e-12 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10037694 [exp] 64 / 4e-12 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10002621 [exp] 63 / 4e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10015687 [exp] 63 / 6e-12 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070700 [exp] 236 / 3e-81 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.001G276100 [exp] 236 / 3e-81 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.010G185200 [exp] 75 / 3e-16 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 72 / 3e-15 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.003G103400 [exp] 70 / 7e-15 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.004G210000 [exp] 68 / 7e-14 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 68 / 7e-14 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.012G017700 [exp] 65 / 8e-13 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.001G130500 [exp] 62 / 4e-12 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.015G010200 [exp] 62 / 6e-12 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10036033 pacid=23141031 polypeptide=Lus10036033 locus=Lus10036033.g ID=Lus10036033.BGIv1.0 annot-version=v1.0 ATGGCGGGAGAGCTGAATCAGCTGCAACAACAACAGTCTGGCGCCGGAAAGTTGCAGACTACGGAGGAGACTGTCGACGCCCTCCTCGAGGCCGCCAGGT ACGATGATATTGATGACATCAAGAGCTTAGTGTCTTCTGGAGTTCCTCTCAATTCTAAGGACTCATTTGGAAGGACAGCACTTCACATGGCTTCTGCTAA TGGACACCTTGATATTGTCCAGTATCTGATTGATCAAGGAGTGGATCTGAACGCTTCCAATGAGGAGAAGAATACGGCCCTTCACTGGGCTTGCCTGAAT GGTCACAGTGAGGTGGTTAAGAAATTGATCCTAGCCGGAGCTAGTTTATGCACTCTCAACAGCCATGAGAGGACTCCTATGGACGAAGCCGTTACTCGGG GCAAAACGGAAGTTAGCGATGCAATTAACGCAGCTGTAGCACAACTGGAACTTGCTGGTGTTACAGTTTCCTAA
AA sequence Show only first row Show all	>Lus10036033 pacid=23141031 polypeptide=Lus10036033 locus=Lus10036033.g ID=Lus10036033.BGIv1.0 annot-version=v1.0 MAGELNQLQQQQSGAGKLQTTEETVDALLEAARYDDIDDIKSLVSSGVPLNSKDSFGRTALHMASANGHLDIVQYLIDQGVDLNASNEEKNTALHWACLN GHSEVVKKLILAGASLCTLNSHERTPMDEAVTRGKTEVSDAINAAVAQLELAGVTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	0	1
AT5G14710			unknown protein		Lus10014543 [exp]	2.4	0.8063
AT5G46030			unknown protein		Lus10025438 [exp]	4.0	0.8174
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	4.2	0.7833
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	6.3	0.7997
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10034122 [exp]	7.4	0.7769
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	7.9	0.8030
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	8.8	0.7675
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	12.0	0.7958
AT2G37120			S1FA-like DNA-binding protein ...		Lus10015073 [exp]	15.5	0.7483
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	18.0	0.7759

Compare expression of checked genes

Lus10036033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.