Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19430 212 / 2e-68 RING/U-box superfamily protein (.1.2) AT5G12310 196 / 2e-62 RING/U-box superfamily protein (.1) AT2G39100 46 / 1e-05 RING/U-box superfamily protein (.1) AT2G42030 44 / 8e-05 RING/U-box superfamily protein (.1) AT4G14220 43 / 0.0001 RHF1A RING-H2 group F1A (.1) AT3G58030 42 / 0.0003 RING/U-box superfamily protein (.1.2.3.4) AT1G49230 40 / 0.0007 RING/U-box superfamily protein (.1) AT5G38895 40 / 0.0009 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009695 [exp] 436 / 1e-156 AT5G19430 221 / 3e-72 RING/U-box superfamily protein (.1.2) Lus10034165 [exp] 45 / 3e-05 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10010513 [exp] 45 / 4e-05 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 45 / 5e-05 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10013606 [exp] 43 / 0.0001 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 43 / 0.0001 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 41 / 0.0005 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 41 / 0.0006 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275900 [exp] 303 / 2e-104 AT5G19430 236 / 3e-78 RING/U-box superfamily protein (.1.2) Potri.009G070600 [exp] 276 / 8e-94 AT5G19430 224 / 2e-73 RING/U-box superfamily protein (.1.2) Potri.018G064400 [exp] 45 / 2e-05 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.010G092300 [exp] 44 / 8e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.001G101700 [exp] 41 / 0.0003 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.003G129900 [exp] 40 / 0.0005 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 40 / 0.0009 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.013G011400 [exp] 40 / 0.001 AT3G05670 417 / 7e-133 RING/U-box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036034 pacid=23141273 polypeptide=Lus10036034 locus=Lus10036034.g ID=Lus10036034.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCAGTCATCAGCATCCACTCCGAGATCTTGGTTGACGATCTGGCCTGCGTTTCTGTTCATGATCAGGTTTTGGCTAATCAGGGCGAAATTG AGACTAAGGCTGAGTCCTCGGGAGAGGCCTCTGGTGGTCATGGTGGGATTTGTGCGATTTGCTTGGATAAAATTGTCCTGGAGGAAACTGCCCTTATTAA GGGTTGTGAGCATGCTTACTGTGTAACTTGCATCCTCCGGTGGGCAATGTACAGTAAGAATCAAAATTGCCCACAATGCAAACATCCATTTGAATCTCTG AATGTTCATCGGTCTCTCGATGGCAGCATCCATGATTACATGTTTGAGGAAAGCGTGTGCCTTCTGCTCAGAGCCTCGTGGTTTAAACCATTGGTAGTGG AAAGTCACAGCACTGTGTATGATGATCCAGATGAGTTATTTCCATATGATCAATATGAATATGGGTATGGGTATGAGGACGAAGAAGATGATCTGGATGA TGCTTACTTCAGCAGTTCTTCTGTCATTCGGATTGGCAACAGAAGGTGGGGGGACAATGGATACGTTAGAGCAGGTCGCCAAGAGGCAAGGCCAAGGCCC GTTAATAGGCCGAACAACCAAGATTCTGGAGCAGCCTCATCGTCGTCTCGTGAACCCAGGAAGGAGGCAGTAAAGGATAAGACAGGGCGGCGTGCGAAAA GAACACTGAAGCGTGAAGCTGCTGACAAGGCAGCTGCTGTGAAACATCAGCAGCATTTGGCGAGGCTGGGGCGCCAGTGA
AA sequence Show only first row Show all	>Lus10036034 pacid=23141273 polypeptide=Lus10036034 locus=Lus10036034.g ID=Lus10036034.BGIv1.0 annot-version=v1.0 MSSSVISIHSEILVDDLACVSVHDQVLANQGEIETKAESSGEASGGHGGICAICLDKIVLEETALIKGCEHAYCVTCILRWAMYSKNQNCPQCKHPFESL NVHRSLDGSIHDYMFEESVCLLLRASWFKPLVVESHSTVYDDPDELFPYDQYEYGYGYEDEEDDLDDAYFSSSSVIRIGNRRWGDNGYVRAGRQEARPRP VNRPNNQDSGAASSSSREPRKEAVKDKTGRRAKRTLKREAADKAAAVKHQQHLARLGRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19430			RING/U-box superfamily protein...		Lus10036034 [exp]	0	1
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	2.8	0.8690
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	4.9	0.8669
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	6.9	0.8195
AT5G08450			unknown protein		Lus10004299 [exp]	8.9	0.8100
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	11.0	0.8002
AT1G36980			unknown protein		Lus10035779 [exp]	11.0	0.8347
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	14.7	0.8198
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	15.0	0.8102
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	17.0	0.8325
					Lus10003561 [exp]	18.3	0.7719

Compare expression of checked genes

Lus10036034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.