Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12300 183 / 2e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G50570 155 / 1e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G55530 126 / 8e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009692 [exp] 403 / 1e-140 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001346 [exp] 281 / 2e-94 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032578 [exp] 149 / 2e-41 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10003765 [exp] 133 / 8e-35 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 123 / 3e-32 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009693 [exp] 114 / 2e-31 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 71 / 1e-13 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070400 [exp] 319 / 3e-106 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 311 / 3e-103 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G088400 [exp] 177 / 2e-51 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 171 / 2e-49 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036036 pacid=23141196 polypeptide=Lus10036036 locus=Lus10036036.g ID=Lus10036036.BGIv1.0 annot-version=v1.0 ATGGGCCCGGGCGACCCCGTATCCCCCCGGATCGACACCGGCGGCGGGAGGAACCCGGAATTCAACGAGAAGATCGCCGTCAAAGTCTCCCAAGTCCTCG ACGCTGTCGTTAAATGCGAGATCTGGATGTTCAGCAGGGCTAGAAACTTGATGGAGGATCAGCTCCTCGGATTCGCTCTCGTCCCTGTTTCTCAGGTGAT CGGGAAAGGGGAAGTCTCGCGAGATTATACACTCTCCTCTACTGATCTCTTCCATTCCCCTGCCGGAACCGTTAAGTTGACCCTCTGTTTAACGCCGTTA ACGTTATCTCTTCCTTCCTCCGCCACCGTTAATTCCTCGATTTCGTCCGAGGTAGTTCTGCTCGATCATAGGAAGATGGACCCCGTGGAGTATTCTAGAA TCGAATTTCCCGATTTCAACGTCATCCAGCAGAATCAGCAAATGGTTTCTGAGTATTTCGATCGGAAACTCGGTTCCTTCCTCCATTTAGGAAATCTTCC TCCTCTCCCCGCCGATTGCGGTAGTGGTTCAGTTTCTCCCGGCGGAAGCTTCAGGACATCATCCGGGTTCATTAGCTCCTCCACTACTACAAGCTTCAGC GACGAGAGGAAGAAGAGCTGGCAATCGTCGCCGTCCACCACCTCCTTGAACGTCTCTGTTTCCGGTGAATGCAATCAGAGCTCGTCATCTTCGTCCGGCG GGTGTCCGGACACTCCGACGTCGAGGAAAGGGAGCGTAATCAGAGACGAGAAAGACAGGAGGAAAGAAGAGGGAAACGGTAAGTACGGCGAAATCATAGC GGCGACTACTCTGCCGCCGGTGATTCCGAAGATGAATTCGGAGGCGGAGGAATCGGCTATGCAGCAGCAGATAGTGGATATGTACATGAGGAGTATGCAG CAGTTTACTGAGTCGCTTGCTAAAATGAAGCTTCCGATGGATTTGGACAAGCCCGGGGGAGGAGGAGGAGGAGGAGATTTGATACAAGCGATTCATGGGA ATAGTGGTAATGATCATAAACAGGAGGATGAAATTAATGGGCACCAACAACAGCAGCAGAAGAAGAAAAAGGATGGATCGAGGGTGTTTTATGGAAGCCG AGCTTTCTTCTAG
AA sequence Show only first row Show all	>Lus10036036 pacid=23141196 polypeptide=Lus10036036 locus=Lus10036036.g ID=Lus10036036.BGIv1.0 annot-version=v1.0 MGPGDPVSPRIDTGGGRNPEFNEKIAVKVSQVLDAVVKCEIWMFSRARNLMEDQLLGFALVPVSQVIGKGEVSRDYTLSSTDLFHSPAGTVKLTLCLTPL TLSLPSSATVNSSISSEVVLLDHRKMDPVEYSRIEFPDFNVIQQNQQMVSEYFDRKLGSFLHLGNLPPLPADCGSGSVSPGGSFRTSSGFISSSTTTSFS DERKKSWQSSPSTTSLNVSVSGECNQSSSSSSGGCPDTPTSRKGSVIRDEKDRRKEEGNGKYGEIIAATTLPPVIPKMNSEAEESAMQQQIVDMYMRSMQ QFTESLAKMKLPMDLDKPGGGGGGGDLIQAIHGNSGNDHKQEDEINGHQQQQQKKKKDGSRVFYGSRAFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	0	1
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10028579 [exp]	2.8	0.9153
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	7.7	0.9174
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	8.3	0.9335
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	11.6	0.9319
AT5G24010			Protein kinase superfamily pro...		Lus10039274 [exp]	13.3	0.8544
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	13.3	0.9022
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10020516 [exp]	13.7	0.8761
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	18.9	0.9296
AT1G70420			Protein of unknown function (D...		Lus10042116 [exp]	19.0	0.9092
AT1G11655			unknown protein		Lus10020050 [exp]	22.5	0.9212

Compare expression of checked genes

Lus10036036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.