Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13500 502 / 1e-179 unknown protein AT2G25260 442 / 4e-156 unknown protein AT5G25265 425 / 5e-149 unknown protein AT3G01720 56 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009691 [exp] 659 / 0 AT5G13500 541 / 0.0 unknown protein Lus10041028 [exp] 445 / 6e-157 AT5G25265 618 / 0.0 unknown protein Lus10005347 [exp] 443 / 3e-156 AT5G25265 612 / 0.0 unknown protein Lus10022320 [exp] 54 / 1e-07 AT3G01720 1181 / 0.0 unknown protein Lus10014878 [exp] 54 / 1e-07 AT3G01720 1197 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070000 [exp] 583 / 0 AT5G13500 515 / 0.0 unknown protein Potri.001G275600 [exp] 577 / 0 AT5G13500 543 / 0.0 unknown protein Potri.001G028100 [exp] 523 / 0 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 498 / 8e-178 AT5G13500 532 / 0.0 unknown protein Potri.006G258800 [exp] 445 / 3e-157 AT5G25265 577 / 0.0 unknown protein Potri.018G023100 [exp] 444 / 9e-157 AT5G25265 583 / 0.0 unknown protein Potri.001G336400 [exp] 60 / 1e-09 AT3G01720 1215 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036037 pacid=23141126 polypeptide=Lus10036037 locus=Lus10036037.g ID=Lus10036037.BGIv1.0 annot-version=v1.0 ATGGGGAGGGTGTCACCTTTGCTACTGGTGCTTTTGGCATTTGGGTTTGCCTTTGCAACCTATAACTTGTTAACGTTGATAATCAACTACAAGACCACCA ATTCAGGAGATGGATCAGGTGGTTTTTCTGATCCCATAGCTACGATGCCTCAGAGGGTGAGGAAATTAGGGAACCCGAATTTGAAATACCATGTGGCGCT TACCGCAACTGATGCTCCTTATAGTCAGTGGCAATGCCGGATTATGTACTACTGGTATAGGAGGATGAAAGATGCCCCCGGATCGGACATGGGGAAGTTC ACACGAGTTTTGCATTCAGGGAAGGCCGATAATCTTATGGACGAAATCCCTACTTTCATTGTTGATCCTCTGCCAGAGGGTTTGGATCGGGGGTATATTG TCTTAAACAGACCGTGGGCCTTTGTTCAGTGGCTGGAAAAGGCAACCATTGAGGAAGATTACATCCTAATGGCTGAGCCAGATCACCTATTTGTTAATCC GTTGCCTAACCTGTCACATGGAAGCAATCCAGCAGCATTTCCCTTCTTCTACATTAAACCAGCAGAACATGAGAATGTAGTCAGAAAGTTTTATCCCAAG GAGAAGGGTCCAGTCACGGACGTGGATCCTATTGGAAATTCTCCCGTGATTATTAAGAAGACCATCCTGGAGGAAATTTCACCAACATGGGTCAATGTAT CATTGAGGATGAAAGATGACCCAGAGACAGATAAAGCATTCGGTTGGGTGCTAGAAATGTATGCTTATGCTGTAGCGTCAGCGTTACATGGTGTTCATCA TATACTTCGAAAAGACTTCATGATACAGCCACCATGGGATTTGAAAGTTGGGAAGACCTTCATAATTCATTATACTTACGGTTGCGACTACAACTTAAAG GGAGAATTAACTTATGGGAAGATTGGGGAATGGCGTTTTGACAAAAGATCCTATCTTAGTGGTCCTCCACCAAGGAATCTCTCATTGCCTCCACCAGGAG TTCCAGAAAGTGTGGTGAGATTGGTAAAAATGGTAAACGAAGCGACGGCGAATATACCAGGTTGGGAGAGGTGA
AA sequence Show only first row Show all	>Lus10036037 pacid=23141126 polypeptide=Lus10036037 locus=Lus10036037.g ID=Lus10036037.BGIv1.0 annot-version=v1.0 MGRVSPLLLVLLAFGFAFATYNLLTLIINYKTTNSGDGSGGFSDPIATMPQRVRKLGNPNLKYHVALTATDAPYSQWQCRIMYYWYRRMKDAPGSDMGKF TRVLHSGKADNLMDEIPTFIVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEDYILMAEPDHLFVNPLPNLSHGSNPAAFPFFYIKPAEHENVVRKFYPK EKGPVTDVDPIGNSPVIIKKTILEEISPTWVNVSLRMKDDPETDKAFGWVLEMYAYAVASALHGVHHILRKDFMIQPPWDLKVGKTFIIHYTYGCDYNLK GELTYGKIGEWRFDKRSYLSGPPPRNLSLPPPGVPESVVRLVKMVNEATANIPGWER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13500			unknown protein		Lus10036037 [exp]	0	1
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	5.0	0.9281
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	5.7	0.9332
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	6.8	0.9323
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	7.1	0.9315
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	7.2	0.9290
AT2G42700			unknown protein		Lus10017646 [exp]	10.8	0.9041
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	11.4	0.9027
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	12.0	0.9223
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	12.4	0.9173
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	14.3	0.8628

Compare expression of checked genes

Lus10036037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.