Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26870 422 / 3e-147 NPC2 non-specific phospholipase C2 (.1) AT1G07230 371 / 6e-127 NPC1 non-specific phospholipase C1 (.1) AT3G48610 352 / 3e-119 NPC6 non-specific phospholipase C6 (.1) AT3G03530 326 / 6e-109 NPC4 non-specific phospholipase C4 (.1) AT3G03520 324 / 2e-108 NPC3 non-specific phospholipase C3 (.1) AT3G03540 318 / 3e-106 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005860 [exp] 362 / 3e-123 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10040678 [exp] 362 / 3e-123 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10035935 [exp] 342 / 2e-115 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 338 / 5e-114 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10028492 [exp] 325 / 5e-109 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10009153 [exp] 324 / 1e-108 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10009690 [exp] 228 / 3e-73 AT2G26870 258 / 9e-82 non-specific phospholipase C2 (.1) Lus10001208 [exp] 159 / 4e-49 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10001207 [exp] 87 / 2e-21 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069900 [exp] 474 / 2e-167 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G275500 [exp] 457 / 1e-160 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 355 / 1e-120 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.015G097900 [exp] 353 / 4e-120 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.013G073600 [exp] 352 / 2e-119 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1) Potri.001G250500 [exp] 350 / 1e-118 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 349 / 4e-118 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10036038 pacid=23141038 polypeptide=Lus10036038 locus=Lus10036038.g ID=Lus10036038.BGIv1.0 annot-version=v1.0 ATGTTCAAGAGCCACGCCAAGCAAGGGAAGCTCCCTAATTACGTGGTGGTGGAGCAGCGCTACACCGACATGAAAATCGCTCCGGCCAACGACGACCACC CTTCCCACGACGTCTACAACGGCCAGATGTTCGTCAAAGAGGTGTATGAGACGTTAAGGGCAAGCCCGCAATGGAACGAGACGATGCTGATAATAACATA CGACGAGCATGGCGGATTTTACGATCACGTATCCACACCTGTTGAAGGAGTACCAAGCCCCGACGGGATAGTGGGTCCGGAGCCATTCAACTTTACTTTT AATCGACTTGGAGTCAGAGTCCCCACCATTGTTGTCTCCCCTTGGATCAATAAGGCCACCGTTGTACATGGGCCAAAAGGTCAACCAACTCCGACTTCGG AGTATGAACACTCCTCAATTCCGGCCACCGTCAAGAAGATATTCAACTTGCCATCTTTCCTCACTCGAAGAGACCAATGGGCTGGAACCTTTGAATCCAT TCTCCAATCCAGAACTCAACCCAGAACTGATTGCCCAGAGCAACTGCCTACACCAATGAAGATCAGGCAAGGCGAGGCAAACGAAGAAGCAAACCTCAGC GAATTCCAGCAGGAAATGCTGCAGCTAGCCGCTGTTCTAAAGGGGGACAACCTTCTTTCCAGTTACCCCAATCAGATTGGGAAAAAAATGACTGTGAAGC AAGGCACTGCTTACATGGAAGATGCTGTTAAAGGCTTCTTTCAGGCTGGTCTTTTCGCTAAGAAGATGGGCGTCGATGACGAACAAATTGTTCAGATGAA GCCTTCCTTAACTACAAGACCAGCTCCCACCAGCAACAATTACCCTTGA
AA sequence Show only first row Show all	>Lus10036038 pacid=23141038 polypeptide=Lus10036038 locus=Lus10036038.g ID=Lus10036038.BGIv1.0 annot-version=v1.0 MFKSHAKQGKLPNYVVVEQRYTDMKIAPANDDHPSHDVYNGQMFVKEVYETLRASPQWNETMLIITYDEHGGFYDHVSTPVEGVPSPDGIVGPEPFNFTF NRLGVRVPTIVVSPWINKATVVHGPKGQPTPTSEYEHSSIPATVKKIFNLPSFLTRRDQWAGTFESILQSRTQPRTDCPEQLPTPMKIRQGEANEEANLS EFQQEMLQLAAVLKGDNLLSSYPNQIGKKMTVKQGTAYMEDAVKGFFQAGLFAKKMGVDDEQIVQMKPSLTTRPAPTSNNYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	0	1
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	1.4	0.9263
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	3.2	0.9182
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	3.5	0.9152
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	3.5	0.9147
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	4.0	0.8989
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	4.9	0.9046
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	5.5	0.9103
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	6.2	0.8912
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	9.5	0.8972
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	10.9	0.8864

Compare expression of checked genes

Lus10036038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.