Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26870 223 / 1e-70 NPC2 non-specific phospholipase C2 (.1) AT1G07230 176 / 7e-53 NPC1 non-specific phospholipase C1 (.1) AT3G03520 152 / 9e-44 NPC3 non-specific phospholipase C3 (.1) AT3G48610 148 / 3e-42 NPC6 non-specific phospholipase C6 (.1) AT3G03530 137 / 4e-38 NPC4 non-specific phospholipase C4 (.1) AT3G03540 137 / 5e-38 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005860 [exp] 173 / 2e-51 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10040678 [exp] 171 / 2e-50 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10009153 [exp] 167 / 3e-49 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10028492 [exp] 166 / 7e-49 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10035935 [exp] 155 / 6e-45 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 154 / 3e-44 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275500 [exp] 244 / 5e-79 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.009G069900 [exp] 236 / 1e-75 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.009G045100 [exp] 173 / 1e-51 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.001G250500 [exp] 167 / 3e-49 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.013G073600 [exp] 165 / 1e-48 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1) Potri.012G099300 [exp] 162 / 1e-47 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.015G097900 [exp] 161 / 3e-47 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10036039 pacid=23141257 polypeptide=Lus10036039 locus=Lus10036039.g ID=Lus10036039.BGIv1.0 annot-version=v1.0 ATGCTCCACCGCCGATCTTTCTCCGGCGCCGCCGCCTCCCTCTTCACCTTCCTCCTCCTTTTGCTCTCAAACAATGTCGTCCACCACATCCAGGCAGTCT CAAGCAACAAAAACAGCCCAATCAAGACCGTCGTCGTATTAGTGATGGAGAATCGCTCCTTCGACCACATGCTAGGCTGGATGAAGAAGCTCAACCCGGA AATCAACGGCGTCGACGGCACCCAGTGGAACCCGCTAAACACATCCGATCCAAACTCCGGTAAAGTATACTTCCAGGACCAGGCCCATTACGTGGATCCG GATCCGGGTCACTCATTCCAGGCAATCAGGGAGCAGATATTCGGGTCGAATGATACTTCTAAAGATCCCCCGCCGATGAATGGGTTCGCCCAGAATGCTC TCTCCATGGACCCTTCTGCCAACATGTCCAGAGACGTCATGAATGGCTTCCACCCTGATTCCGTCGCCGTTTACAAGGCTCTCGTTTCTGAATTCGCCGT CTTTGACAGGTTTTTCATTAATGTTAATTTCCTGATTGATTTAATTCCATATTTTGTTCTTGGTTTTGGGGATTGCTGA
AA sequence Show only first row Show all	>Lus10036039 pacid=23141257 polypeptide=Lus10036039 locus=Lus10036039.g ID=Lus10036039.BGIv1.0 annot-version=v1.0 MLHRRSFSGAAASLFTFLLLLLSNNVVHHIQAVSSNKNSPIKTVVVLVMENRSFDHMLGWMKKLNPEINGVDGTQWNPLNTSDPNSGKVYFQDQAHYVDP DPGHSFQAIREQIFGSNDTSKDPPPMNGFAQNALSMDPSANMSRDVMNGFHPDSVAVYKALVSEFAVFDRFFINVNFLIDLIPYFVLGFGDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	0	1
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	1.4	0.9263
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	2.0	0.9154
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	2.0	0.9269
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	3.0	0.9232
AT4G34100			RING/U-box superfamily protein...		Lus10014076 [exp]	3.3	0.8919
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	3.5	0.9102
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	3.9	0.9152
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	5.7	0.9055
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	6.3	0.8580
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	6.5	0.8885

Compare expression of checked genes

Lus10036039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.