Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19400 367 / 8e-118 SMG7 Telomerase activating protein Est1 (.1.2.3) AT1G28260 117 / 4e-28 Telomerase activating protein Est1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009689 [exp] 667 / 0 AT5G19400 738 / 0.0 Telomerase activating protein Est1 (.1.2.3) Lus10015430 [exp] 129 / 4e-32 AT1G28260 483 / 5e-158 Telomerase activating protein Est1 (.1.2) Lus10014007 [exp] 112 / 1e-26 AT1G28260 473 / 4e-154 Telomerase activating protein Est1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275400 [exp] 535 / 0 AT5G19400 759 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.006G038500 [exp] 444 / 2e-148 AT5G19400 620 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.004G045300 [exp] 156 / 2e-41 AT1G28260 555 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.011G053800 [exp] 150 / 1e-39 AT1G28260 560 / 0.0 Telomerase activating protein Est1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10374 [flax] [poplar] EST1 Telomerase activating protein Est1
Representative CDS sequence Show only first row Show all	>Lus10036041 pacid=23141248 polypeptide=Lus10036041 locus=Lus10036041.g ID=Lus10036041.BGIv1.0 annot-version=v1.0 ATGTCTGCTCCTTCTTCTCGGGAGCGTGCACAACGTCTATATGAAAAGAACATTGAGCTGGAGAATAAACATAGGAGGTCAGCTCAGGCACGTGTTCCGT CTGATCCGAATGCCTGGCAACAGATCCGTGAGAACTATGAGTCCATAATTCTCGAGGATCATGGTTTTTCTGAACAGCATAACATAGAATATGCTCTATG GCAATTGCATTATAGGCGTATTGAGGAGTTGAGAGCTCACCTTAGTGGCGCTCTTAATTCTGCTACCTCAAATTCATCTCAGGCTCCTGCTCGTCCTGAT CGAATCCAAAAGATACGATCACAATTCAAAACTTTTCTCTCTGAGGCAACTGGGTTTTATCATGATCTGATTCTGAAAATCAGAGCCAAGTATGGGCTTC CTCTGGGGTTCTTCACAGATGGTTCCGATGATAGAGTTGTTATGGAGAAAGATGATAAGAAATCGGCTGACATCAAGAAAGGACTGATTTCCTGCCACCG TTGTTTGATATACTTGGGTGACCTTGTAAGGTACAAAGGTCTTTATGGGGAAGGTGACTCTAAGACACGAGAGTATGCAGCAGCTTCGAGTTACTACTTA CAGGCTGCTTCTCTTTGGCCATCAAGTGGGAATCCCCATCATCAGCTTGCTATTTTAGCCTCATATTCTGGCAATGAGCTGGTGGCAGTGTACAGGTATT TTAGGAGCTTGGCTGTGGATAATCCCTTTATGACAGCGCGGGATAATTTGATTGTTGCTTTTGAGAAGAACCGGCAGAGTTACTCTCAGTTGGTTGGAGA TGTCAAAGCTTCTCCAGTTAAGGAGTCAGGAGTTCGGGGGAATGGCAGAGGAAGAGGAAAAGCAGAGGCCAAAGGCGCAACTAAAAACCCAAACCTTGGA GCTGATGGTACCAAGGAGAAGACTATGGATATTATGGAGATTCGCAAATCATTTTGCACTCGATTTGTGCGTTTGAATGGAATTCTATTTACACGCACAA GCCTGGAGATGTTTGCTGAACTTCTTGCATCAGTCAGCTGTACTTTCTGTGAGCTTCTTTCTGCTGGCCCTGAAGAGACGCTAAATTTTGGATCAGAAGC TAATGAAGCTGTCCTCTGCCCTTCTTATCCTTTGATCATGGGAGTATGGTATTTAGTTGGTCAGCCAATGGAAACGTTGATAGTCTGA
AA sequence Show only first row Show all	>Lus10036041 pacid=23141248 polypeptide=Lus10036041 locus=Lus10036041.g ID=Lus10036041.BGIv1.0 annot-version=v1.0 MSAPSSRERAQRLYEKNIELENKHRRSAQARVPSDPNAWQQIRENYESIILEDHGFSEQHNIEYALWQLHYRRIEELRAHLSGALNSATSNSSQAPARPD RIQKIRSQFKTFLSEATGFYHDLILKIRAKYGLPLGFFTDGSDDRVVMEKDDKKSADIKKGLISCHRCLIYLGDLVRYKGLYGEGDSKTREYAAASSYYL QAASLWPSSGNPHHQLAILASYSGNELVAVYRYFRSLAVDNPFMTARDNLIVAFEKNRQSYSQLVGDVKASPVKESGVRGNGRGRGKAEAKGATKNPNLG ADGTKEKTMDIMEIRKSFCTRFVRLNGILFTRTSLEMFAELLASVSCTFCELLSAGPEETLNFGSEANEAVLCPSYPLIMGVWYLVGQPMETLIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19400		SMG7	Telomerase activating protein ...		Lus10036041 [exp]	0	1
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	5.3	0.9037
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	5.5	0.9013
AT3G28430			unknown protein		Lus10011235 [exp]	6.5	0.8896
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	8.9	0.9062
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	10.0	0.8945
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	15.3	0.8949
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	16.0	0.8582
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	16.6	0.8981
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	18.5	0.8954
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	19.7	0.8996

Compare expression of checked genes

Lus10036041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.