Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15390 151 / 9e-43 HXXXD-type acyl-transferase family protein (.1) AT1G24430 143 / 8e-40 HXXXD-type acyl-transferase family protein (.1) AT5G47950 143 / 1e-39 HXXXD-type acyl-transferase family protein (.1) AT3G26040 140 / 1e-38 HXXXD-type acyl-transferase family protein (.1) AT3G30280 138 / 9e-38 HXXXD-type acyl-transferase family protein (.1) AT5G47980 125 / 3e-33 HXXXD-type acyl-transferase family protein (.1) AT1G24420 122 / 8e-32 HXXXD-type acyl-transferase family protein (.1) AT5G23970 119 / 1e-30 HXXXD-type acyl-transferase family protein (.1) AT4G15400 99 / 2e-23 HXXXD-type acyl-transferase family protein (.1) AT5G41040 81 / 5e-17 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036043 [exp] 558 / 0 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 280 / 4e-92 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10021392 [exp] 280 / 4e-92 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 268 / 4e-87 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 263 / 3e-85 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 259 / 1e-83 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 221 / 2e-69 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 202 / 5e-62 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 194 / 1e-58 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 206 / 2e-63 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 205 / 6e-63 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 199 / 1e-60 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 199 / 1e-60 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 196 / 8e-60 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 196 / 8e-60 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 195 / 3e-59 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 195 / 3e-59 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 194 / 4e-59 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 186 / 1e-55 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036042 pacid=23140976 polypeptide=Lus10036042 locus=Lus10036042.g ID=Lus10036042.BGIv1.0 annot-version=v1.0 ATGGAAGTTTCCGTCCTATCAATAGAAACTGTGAAGCCATCAACATTACATCCTAAAACTCAACCATTAGAGCTCAACCTCTTGGACCAGCTAACTCCCA TGAGTTATTCCCCACTCATCCTCTTCTACCAGAACAGCCACCAACTCGGTCAAATTGATGTTTCGACCCGCCTCAAGTCGTCCCTCTCCCAAGCTCTCTC CGTCTACTACCCTCTAGCCGGCAGGGTTAGCGACAATTTCACCATCCACGACTTCGACAAAGGGGTCCCCTTTATCGAAACCCGTGTTAATGGACGATTG TTTGATTTCCTTAACGGTGCTGATCAGAGCTCGCTGATGGGATCACTCAACAACCTCCTTCCCTTTAAGACCTTCTGCAGTGCCCCAGAGACGGGTCCAC AGTGTGGATTCCAAGTCAACATGTTCGAATGTGGTGGGCTGGCTCTTGGGTTGTGCTCTTCGCACAAGAGCCACGACGGAATTACGGTGAGTGCTTTCCT TAATGTTTGGGCGGCGATTAGCGCGAACCGCCCAGACAAAATTGTGCCTCCCGAATTTGAGGGAGGACCGTTGACTTTTCCTTTAGCAAAGCCGATGCCA CGTCAATATGAATCCCTGGCGAAAGGGGTTTGGTTTGAGAACGGAGGGAAACCGGTGACCAGGAGGTTCATGTTCGTTGGGGAGTCGGTCGCCAAATTAA GGGCGAGCGCTAGAAGTGAAACAATAGAGCGACCAACTCGGGCGGAGGCAGTATCAGCTTTCATATGGAAGTTTATAATACATTCGTCCAAATCTCAAAA CCACTCGGTCTTAACTCAGAGTGTTGACCTAAGGCGGCTAGTCAAATAG
AA sequence Show only first row Show all	>Lus10036042 pacid=23140976 polypeptide=Lus10036042 locus=Lus10036042.g ID=Lus10036042.BGIv1.0 annot-version=v1.0 MEVSVLSIETVKPSTLHPKTQPLELNLLDQLTPMSYSPLILFYQNSHQLGQIDVSTRLKSSLSQALSVYYPLAGRVSDNFTIHDFDKGVPFIETRVNGRL FDFLNGADQSSLMGSLNNLLPFKTFCSAPETGPQCGFQVNMFECGGLALGLCSSHKSHDGITVSAFLNVWAAISANRPDKIVPPEFEGGPLTFPLAKPMP RQYESLAKGVWFENGGKPVTRRFMFVGESVAKLRASARSETIERPTRAEAVSAFIWKFIIHSSKSQNHSVLTQSVDLRRLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10036042 [exp]	0	1
AT1G16760			Protein kinase protein with ad...		Lus10008609 [exp]	1.4	0.8343
AT2G24370			Protein kinase protein with ad...		Lus10008610 [exp]	3.9	0.8098
AT1G14950			Polyketide cyclase/dehydrase a...		Lus10033397 [exp]	6.2	0.8176
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	13.0	0.8122
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036043 [exp]	13.2	0.8004
					Lus10033509 [exp]	25.2	0.8165
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	26.7	0.8047
AT1G54120			unknown protein		Lus10008114 [exp]	27.3	0.7877
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10004582 [exp]	30.6	0.7143
AT5G25265			unknown protein		Lus10041028 [exp]	32.3	0.7899

Compare expression of checked genes

Lus10036042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.