Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 177 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT1G24430 171 / 2e-48 HXXXD-type acyl-transferase family protein (.1) AT4G15390 168 / 5e-47 HXXXD-type acyl-transferase family protein (.1) AT3G30280 160 / 4e-44 HXXXD-type acyl-transferase family protein (.1) AT5G47950 158 / 2e-43 HXXXD-type acyl-transferase family protein (.1) AT1G24420 152 / 3e-41 HXXXD-type acyl-transferase family protein (.1) AT5G47980 149 / 6e-40 HXXXD-type acyl-transferase family protein (.1) AT5G23970 138 / 4e-36 HXXXD-type acyl-transferase family protein (.1) AT4G15400 116 / 3e-28 HXXXD-type acyl-transferase family protein (.1) AT2G19070 99 / 4e-22 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036042 [exp] 559 / 0 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10021392 [exp] 385 / 7e-131 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 378 / 1e-127 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 365 / 9e-123 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 358 / 4e-120 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 356 / 6e-119 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 284 / 4e-91 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 252 / 9e-79 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 249 / 2e-77 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 264 / 2e-83 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 261 / 2e-82 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 257 / 7e-81 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 236 / 1e-72 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 236 / 1e-72 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 234 / 3e-72 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 232 / 3e-71 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 232 / 3e-71 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 228 / 7e-70 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 228 / 7e-70 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036043 pacid=23141212 polypeptide=Lus10036043 locus=Lus10036043.g ID=Lus10036043.BGIv1.0 annot-version=v1.0 ATGGAAGTTTCCGTCCTATCAATAGAAACTGTGAAGCCATCAACATTGCATCCTAAAACTCAACCATTCGAGCTCAACCTCTTGGACCAGCTAACTCCCA CGAGTTATTCCCCACTCATACTCTTCTACCAGAACAGCCACCAACTCGGTCAAATTGATGTTTCGACCCGCCTCAAGTCGTCCCTCTCCCAAGCTCTCTC CGTCTACTACCCTCTAGCCGGCAGGGTTAGCGACAATTTCACCATCCACGACTTCGACAAAGGGGTCCCCTTTATCGAAACCCGTGTTAATGGACGATTG TCTGATTTCCTTAACGGTGCTGATCAGAGCTCGTTGATGGGATCACTCAACAACCTCCTCCCCTTTAAGACCTTCTGCAATGCCCCAGAGACGGGCCCAC AGTACGGATTCCAAGTCAACATGTTTGAATGTGGTGGGCTGGCTCTTGGGTTGTGCTCTTCGCACAAGAGCCACGACGGAATTGCGGCAAGCGCTTTCCT TAATGTCTGGGCGGCGATTAGCGCAAACCGCCCAGACAAAATTGTGCCTCCCGAATTTGAGGGAGGACCGTTGACTTTTCCTTCGGCAAAGCCGATGCCA AGTCAATATGAATCCCTGACGAAAGGAGTTTGGTTTGAGAACGGAGGGAAACCGGTGACCAGGAGGTTCATGTTCGTTGGGGAATCGGTCGCCAAACTAA GGGCGAGCGCTAGAAGTGAAAGAATAGAACGACCAACTCGGGCGGAGGCAGTATCAGCTTTCATATGGAAGTTTATAATACATTCGTCCAAATCTCAAAA CCACTCGGTCTTAACTCAGAGTGTTGACCTAAGGCGGCTAGTCAAACGGCCGCCTTTGTCTAGCCAATCGTTTGGAAACCTTGTCCTTTTCTCCAATGCT AAATACACTGGTCCTCATCATGACCAATCGATTAAGATCGACCATTTAGCTAGTCTGATACGAACCGGGGTCAAGGAATTGGTTAGCGCTGACTACGTCA GCAGAGGATCGAAAGCCATTTTCGAGTACTACGATCGACAAGCCGAGATCGAGGACGAGAACACAGACGTGATCAACTTATCGTGCTGGCACGGTTTTGG TTTTAGTAGGACTGATTTTGGGTGGGGCCCACCGGTCTGGGTCGGGTTAGGCGGAGCCACAACAGATCATAGTACGACGTCGTCGTATTGCTCGAATTCA ATCATTTTGATCGAGAGCGGAAGTGATGGGATCGAGGCATGGGTGACCTTGGAGGAGGATGTAATGAGTGGACTCGAATCTGATCCGGACTTCTTGCTAT TTGCTGCCACGAACTTTCCAATTTTACGAGTACCAATGCATGATATGCATGCAAAACTATGA
AA sequence Show only first row Show all	>Lus10036043 pacid=23141212 polypeptide=Lus10036043 locus=Lus10036043.g ID=Lus10036043.BGIv1.0 annot-version=v1.0 MEVSVLSIETVKPSTLHPKTQPFELNLLDQLTPTSYSPLILFYQNSHQLGQIDVSTRLKSSLSQALSVYYPLAGRVSDNFTIHDFDKGVPFIETRVNGRL SDFLNGADQSSLMGSLNNLLPFKTFCNAPETGPQYGFQVNMFECGGLALGLCSSHKSHDGIAASAFLNVWAAISANRPDKIVPPEFEGGPLTFPSAKPMP SQYESLTKGVWFENGGKPVTRRFMFVGESVAKLRASARSERIERPTRAEAVSAFIWKFIIHSSKSQNHSVLTQSVDLRRLVKRPPLSSQSFGNLVLFSNA KYTGPHHDQSIKIDHLASLIRTGVKELVSADYVSRGSKAIFEYYDRQAEIEDENTDVINLSCWHGFGFSRTDFGWGPPVWVGLGGATTDHSTTSSYCSNS IILIESGSDGIEAWVTLEEDVMSGLESDPDFLLFAATNFPILRVPMHDMHAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036043 [exp]	0	1
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10036042 [exp]	13.2	0.8004
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032257 [exp]	25.8	0.7647
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	30.8	0.7398
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	37.9	0.8229
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10027427 [exp]	41.8	0.8163
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	42.0	0.8073
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010511 [exp]	47.5	0.8122
					Lus10008695 [exp]	51.8	0.7812
AT5G19640			Major facilitator superfamily ...		Lus10039204 [exp]	62.6	0.7753
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	65.1	0.8050

Compare expression of checked genes

Lus10036043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.