Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76590 91 / 2e-22 PLATZ transcription factor family protein (.1) AT1G21000 91 / 4e-22 PLATZ transcription factor family protein (.1.2) AT2G27930 87 / 4e-21 PLATZ transcription factor family protein (.1) AT1G32700 86 / 4e-21 PLATZ transcription factor family protein (.1.2) AT1G43000 84 / 7e-20 PLATZ transcription factor family protein (.1) AT4G17900 79 / 2e-18 PLATZ transcription factor family protein (.1.2) AT5G46710 77 / 5e-17 PLATZ transcription factor family protein (.1) AT1G31040 62 / 2e-11 PLATZ transcription factor family protein (.1) AT2G12646 62 / 2e-11 PLATZ transcription factor family protein (.1) AT3G60670 54 / 2e-08 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005350 [exp] 172 / 9e-54 AT1G21000 151 / 4e-45 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 105 / 4e-28 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 105 / 8e-28 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 91 / 6e-22 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 90 / 2e-21 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 88 / 4e-21 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 88 / 2e-20 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 87 / 2e-20 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 86 / 2e-20 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212400 [exp] 110 / 3e-30 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 110 / 5e-30 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 109 / 7e-30 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 102 / 7e-27 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 93 / 4e-23 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 92 / 1e-22 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 87 / 6e-21 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 87 / 7e-21 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 84 / 1e-19 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 81 / 2e-18 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10036044 pacid=23141152 polypeptide=Lus10036044 locus=Lus10036044.g ID=Lus10036044.BGIv1.0 annot-version=v1.0 ATGAAATTCTTTATAAGACGCGGAAATTCGAAAAACTTTCACACCTCCTTCAAACCAACATTGAAAAACCGTCGCCGCTGCCGTAATCCTCGCTGGAGCT CTCCGCCGCCGGATAGCCACCGGACCGCCGCCTCGCCGCCGCCGCGCCGTCGAGGTATCAAATTAAGGCCGACGTGCCGACCGGCCGACGACGGCGTCGG CAGTCAACGCCGACTGCCAACTCATGTCATTGGAAGTCAACCCCGACCTTCAGGATTGAAAATTAGAAAGTCGTCGTACAACAACGTGGTGAGGGTTTCT GAGGTAGAAGAGTTGATCGAGCTGAACGGCGTTCAGACTTACGTCATCAACAGTGCCAAGGTAGTGTTCTTGAACGAGCGTCCTTTGACGACCAAAAACG GCAGCTCCTCGTCGTCATCCTCGTCAGTTAGTGGTGTTGGTGGCGGTTTCAACGGCGCCAGGTCTGTTATGCATTTCTGTCAGATTTGTGGCAGAGGCCT CTTGGAAGCTTGCCGCTTCTGTTCCTTGGGATGCAAGCTGGCAAGATTCAAAAGGAATGGTGATACAAGCTTCAAGCTTGCGACCCCGAACAACGGAGGC GAAGAAGACGACGCAATGTATCAATCTCCACTGCCGTAA
AA sequence Show only first row Show all	>Lus10036044 pacid=23141152 polypeptide=Lus10036044 locus=Lus10036044.g ID=Lus10036044.BGIv1.0 annot-version=v1.0 MKFFIRRGNSKNFHTSFKPTLKNRRRCRNPRWSSPPPDSHRTAASPPPRRRGIKLRPTCRPADDGVGSQRRLPTHVIGSQPRPSGLKIRKSSYNNVVRVS EVEELIELNGVQTYVINSAKVVFLNERPLTTKNGSSSSSSSSVSGVGGGFNGARSVMHFCQICGRGLLEACRFCSLGCKLARFKRNGDTSFKLATPNNGG EEDDAMYQSPLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	0	1
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	1.0	0.9487
					Lus10028233 [exp]	3.3	0.9111
					Lus10032535 [exp]	4.1	0.8736
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	4.5	0.9397
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	5.5	0.9397
					Lus10000400 [exp]	6.3	0.9397
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	6.8	0.8042
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10006127 [exp]	6.9	0.7946
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	7.1	0.9397
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	7.7	0.9397

Compare expression of checked genes

Lus10036044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.