Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 110 / 2e-27 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 90 / 6e-21 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 87 / 5e-20 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 86 / 1e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 72 / 5e-14 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G00260 67 / 4e-12 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT2G24645 65 / 2e-11 Transcriptional factor B3 family protein (.1) AT1G49480 53 / 6e-08 B3 REM19, RTV1 related to vernalization1 1 (.1) AT2G24650 54 / 1e-07 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1) AT3G53310 51 / 4e-07 B3 REM20 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009688 [exp] 617 / 0 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 213 / 3e-67 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 176 / 5e-52 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009214 [exp] 153 / 1e-46 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1) Lus10025534 [exp] 152 / 4e-44 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 135 / 7e-39 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10022473 [exp] 125 / 4e-33 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 110 / 2e-27 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010080 [exp] 107 / 2e-26 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 138 / 1e-36 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 130 / 2e-34 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 118 / 5e-30 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 100 / 2e-23 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 99 / 4e-23 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 83 / 2e-18 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 84 / 7e-18 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 80 / 1e-17 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 79 / 3e-16 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 74 / 2e-14 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10036045 pacid=23141066 polypeptide=Lus10036045 locus=Lus10036045.g ID=Lus10036045.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTGGGCAAGCCTCGGCATGGAAATGGAAATGAGAGCAGCTTGAACCAGCAGGAAGCAATAACCCGTTTCTTCAAAATCATCCTCCACACCG CCATTCGTGACAAGAAGCTGATGATACCTAGGAAGTTCATCAGCAGCTACGGAAGCAAAGTGTGGAGATCTGCAACTTTGCAAGTTCCCGTTGGTGGAGA TAAATGGGAGGTGGAGTTAGTAACGGATGACAAGAAACGGGTTTGGTTCTGCAACGATGGGTGGCAGAGATTTGCTGAGTTTTACTCTTTGAAGCATGGC CATTTCTTGCTTTTTGAGTACAAGGATGACTCCACTTTCTCCGTGGTCATATGCGACACCACTGCTACAGAGATTCAGTACCCAGTCACCACCAAAGCTA ATGAAGCTGCTGCACAACCACCCAAGGTAAAGGAAGAAGATGGTGTTTCCAAGGAGAAAGAACAATCTCCTATAGTGGCACCAACTGATGATGCTAAAGG AAAATCTCCTATGGAGGTGCCACCAACTGATGATGTTGCTCAAGTTAGACAAATGAAGAGGCAGAGGTGCAATTTAAACTGGGAATGGAATCCTTGTTCT GCAGTGAAGCATGAAGAGAAAGAAGGTTCAAACTTGGGTGAGAATGATGCTTCACCTGGAAAGCCAAAATCGTGCTGGAAGAGGGAACTCAGCCCCGTAG CTAAAGAAGAAGAATTAACATCAGAGAAACCCTTCTTCACTATCAGAATCACTCCAACTTATGCCAGACAATACTTTGTGCATATACCTCTACGGTTTGC GAGTCAGCAGAGAGCTTTCCAAGGTGAGAAACTTGTGGAGCTGGAGGTTGGGGACAAGGCTTGGACAGTGGATCTCCAATGCAGAAGGTATGTAAAGTTT GCTAGGGGCTGGAAGAGCTTTGTTGAAGATAACTCACTGAAATGTGGTGATGTTTGCACCTTCGAGCTCATCAAGGAATTGCCTAGCGTCTCCATGAAGG TTACCATCACCAGAGATGTCTGA
AA sequence Show only first row Show all	>Lus10036045 pacid=23141066 polypeptide=Lus10036045 locus=Lus10036045.g ID=Lus10036045.BGIv1.0 annot-version=v1.0 MASLGKPRHGNGNESSLNQQEAITRFFKIILHTAIRDKKLMIPRKFISSYGSKVWRSATLQVPVGGDKWEVELVTDDKKRVWFCNDGWQRFAEFYSLKHG HFLLFEYKDDSTFSVVICDTTATEIQYPVTTKANEAAAQPPKVKEEDGVSKEKEQSPIVAPTDDAKGKSPMEVPPTDDVAQVRQMKRQRCNLNWEWNPCS AVKHEEKEGSNLGENDASPGKPKSCWKRELSPVAKEEELTSEKPFFTIRITPTYARQYFVHIPLRFASQQRAFQGEKLVELEVGDKAWTVDLQCRRYVKF ARGWKSFVEDNSLKCGDVCTFELIKELPSVSMKVTITRDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	0	1
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	1.0	0.9227
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	3.7	0.9089
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	4.9	0.8963
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	7.2	0.8694
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	7.5	0.8799
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	7.5	0.8879
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	10.7	0.8581
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	13.2	0.8889
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	13.3	0.8727
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	15.5	0.8645

Compare expression of checked genes

Lus10036045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.