Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33811 187 / 3e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 129 / 2e-33 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 125 / 2e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 125 / 3e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 120 / 3e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 95 / 2e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 88 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19050 86 / 3e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 86 / 5e-18 GLIP7 GDSL-motif lipase 7 (.1) AT2G19060 84 / 2e-17 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000893 [exp] 263 / 2e-84 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034954 [exp] 211 / 3e-66 ND / Lus10023062 [exp] 140 / 8e-38 AT4G02210 67 / 4e-12 unknown protein Lus10011998 [exp] 133 / 7e-35 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 129 / 2e-33 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 126 / 2e-32 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 122 / 5e-31 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032996 [exp] 119 / 2e-30 AT4G02210 49 / 2e-06 unknown protein Lus10002777 [exp] 118 / 3e-29 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102400 [exp] 202 / 3e-61 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 135 / 9e-36 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 133 / 4e-35 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 130 / 5e-35 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008406 [exp] 132 / 6e-35 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 131 / 2e-34 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 131 / 2e-34 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 130 / 3e-34 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 130 / 5e-34 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 129 / 1e-33 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036046 pacid=23141021 polypeptide=Lus10036046 locus=Lus10036046.g ID=Lus10036046.BGIv1.0 annot-version=v1.0 ATGAGTTTGCGTAACGGGATGTTGATGTTGGCTGTGATAGTGTTGTTTGGAAATGTAATGGGAGAGGCTCAAGTGGCGCAACGAGAAGCACAAGTTCCGT GCTTCTTCATATTTGGTCCCACCCGGCTGATTCCAAACGGCCACGTCGACGCTCTTGCCCGTCTTCTTGGGTTCCAGGCCTTCATTCCCCCATTCACCCG AGCAAGAGGGTGCGAATTGTTGAGGGGAGTCAATTTCGCCTCCGGTGCTGCTGGCATCCGTGACGAAACCGGCAACAATTTGGGAGATCACGCGTCGATG AACCAACAAATAATAAACTTCGGGAGGACGGTGGAGGTCATGCAAAGGTACTTCAGAGGGGACACTTCGCTTCTGAAATCGTACCTTGGTCGTTGCATCT ACTTCTCCGGAATGGGAAGTAACAACTACCTCAACAACTACTTCATGTCGAGTTTCTACACCACTTCCTCCGATTACACACCCCTAAGGCCTTCGCTTCC ATCCTCCTCAAAGACTATGCCAACCAACTTGCCCTTGGGAGCTAGGAAGGTGATTGTGACGTCGGTAGGCCAATCGGATGCATCCCTTACCAACTGGCTA GGTATACCAACAACAACAACACCAACAAGAATAGTAGGTGCAACGAGAACACAACAAAGCCATCTCCATCTTCAACACAGGACTCCGACAACTAGTCCAG CGGTTCAACGGCCAAGTTCATCTTCCTTGACTTCTATAAAAGCACTCGCGACTTATATCTCAACTCCATCGCTTATGGGGGTGCTGGTTGGAGCTAGTTT CACTCAGCTCGCAGCTCAACTGAAGGAGCTGCAGCCATCATGCAAACACGATGCTCTTACGGTGAAGACCAAGTTTAGGTCGTACAAGAATAATTTCAAC GCACAGTTGGATCTTATGAACTCATCAGGCATGGGTTGGAACGACGCACGAGGTTGCTATGAATGTGACCCTGATACATGGAGCCTGCATGTTAAGAGTC GCCCATTTGCAGCAGGGTTGCAACATACGAAGCTGGAATGGTGGGATGAACTATGTAAGATCTTCGAGTGTAGTCATGCTGATGGGGCGGTATCTATGAC AGCAACTGAAGCTGCAGCTGCTCTAAAAGCTGAGCTTAATGTAGGTTCCAGTGCACCACAATCTGGGAATTGTAACTACGTAGCTGAGACGACTCTGATG ATGGAAGATTTCATCAATGCTGGGTTTGATATGATATTCAAGATATCGCATACCAAACGAGGCATGTATTCTTTGTAG
AA sequence Show only first row Show all	>Lus10036046 pacid=23141021 polypeptide=Lus10036046 locus=Lus10036046.g ID=Lus10036046.BGIv1.0 annot-version=v1.0 MSLRNGMLMLAVIVLFGNVMGEAQVAQREAQVPCFFIFGPTRLIPNGHVDALARLLGFQAFIPPFTRARGCELLRGVNFASGAAGIRDETGNNLGDHASM NQQIINFGRTVEVMQRYFRGDTSLLKSYLGRCIYFSGMGSNNYLNNYFMSSFYTTSSDYTPLRPSLPSSSKTMPTNLPLGARKVIVTSVGQSDASLTNWL GIPTTTTPTRIVGATRTQQSHLHLQHRTPTTSPAVQRPSSSSLTSIKALATYISTPSLMGVLVGASFTQLAAQLKELQPSCKHDALTVKTKFRSYKNNFN AQLDLMNSSGMGWNDARGCYECDPDTWSLHVKSRPFAAGLQHTKLEWWDELCKIFECSHADGAVSMTATEAAAALKAELNVGSSAPQSGNCNYVAETTLM MEDFINAGFDMIFKISHTKRGMYSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10036046 [exp]	0	1
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	9.6	0.7340
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10027136 [exp]	38.2	0.6040
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	141.7	0.6019

Compare expression of checked genes

Lus10036046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.