Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19390 550 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 417 / 2e-136 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2) AT4G24580 168 / 5e-44 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036167 [exp] 89 / 4e-18 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10005733 [exp] 83 / 5e-17 AT4G24580 350 / 1e-113 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069700 [exp] 780 / 0 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.001G275200 [exp] 751 / 0 AT5G19390 1080 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.002G104300 [exp] 169 / 2e-44 AT4G24580 793 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.005G157400 [exp] 152 / 1e-38 AT4G24580 786 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036047 pacid=23141276 polypeptide=Lus10036047 locus=Lus10036047.g ID=Lus10036047.BGIv1.0 annot-version=v1.0 ATGATGCATACAGTCTCATCTTGTGCTCATGAGAATCGGATGAATCCATCTGCTGTTGCTGCTTGTATGGCACCCTTGCTATTGCGTCCTTTATTAGCTG GTGAATGTGAGTTGGAGGATGACTTTGATGGTAGTGGTGACAATTCTGCTCAGCTTCTTGCTGCTGCAAATGCAGCCAATAATGCTCAGGCCATCATTAC AACTCTTCTTGAGGAGTATGACAACATTTTTGACGATGAAAATCTACAGAGATGCTCTATATCAGCCGATTCTCGAATGGGAAATAGTGGAACTGAAGAT TCTAGTGATGATGAAACTACAAATATGAAAAATAATGGCTACCATGATAAAGAAAATGAAGTAGACCAAGAAACAGATGGTGATGCCGAACGAGTGCTTA GTGGGAAATTGAGTGAAACCAGTGGCTCTGCCGGCAGTGATCTTTATGATTATAAGGCGTTTGCTGGTGATGACTTAGATGTTGAATTACCCAGAAGCAA TCAAGCTGCTGCTGAGAGTTCAAATTTGGTTGTTGAATCTCCACAGATGAGAGATCCTGGTGTGCAACTACTGGAGCTAGGCAAAAATAGGAAAGGAAAT GAAAATTCATTTAATGGAACAGATCCTTTGAGTATTGTACCTCTTGGCGAATCTTACCGTTCCATGGGAGATATCCTGTCTTCAATAGATGTTGAGCCCC AGGTGCCTATGTCTCCTGTTGATTCATCTAAAGAGAAGTCAGCTGGTAAAGCTACACCTTCCAATGGAAATGGAAAGAGATCAACATTTTGGGGAAGAAG CAATGCCAGAAAGACACCGTCAATGGAATCAGTTGGTTCTTCCGAAGAAGAGCTTGCCATTCAGCGGCTTGAAATCACAAAAAATGACTTGAGGCACAGG ATAGCGAAGGAGGCTAGAGGTAATGCGATTCTTCAGGCCAGCTTAGAGAGAAGGAAACAAGCTTTGCATGAGCGCCGCTTGGCACTTGAACAAGATGTAT CAAGACTGCAAGAGCAGCTGCAAGCTGAAAGAGATCTTAGAGCTGCCTTGGAAGTTGGTTTGAGCATGTCTTCTGGGCAGTTATCAAGTTCACGGGGCAT GGACTCAAAAACAAGGGCAGAGCTTGAGGAAATTGCTCTTGCTGAAGCAGATGTGGCCAGGTTAAAGCAGAAAGTTGCAGAACTCCATCATCAGCTTAAT CAGCAGAGGCAGCATCATTATGGTTCTGCAACTGATGATCGGTATCAGCATATCCCAAACCATAATCCTCAACAGAGATTTCTTCAGCAAGATTTTGATA CAACCCTTGCTTATGTAAATCACGAGAGAAAACAGAGACATGAGGAGGGTTTATCAGGAGCTGACTGGAGGAATAACGCTAAAGGAGTGGGACAGTTACC TGGAAGTAGTAGCAGACAGGGAAACAGAAAGCAGTATATAGAATCTACAAGCCTCAGCGACTCTAAAAGTACAGAGGCTTCTACCAATTTGTCGGTGGAC GAGCTTTGTGGTGCTGTTGATTCAGCGCCATCAACTTCAAGACCTGTAGAGGTTACTGATTACCCAAGACATCCATCGGCAGCGTCTTCTGCATTAGTAG AATTGACGACAAGGCTGGATTTCTTCAAGGAAAGGCGGTCTCAGCTGATGGAACAGCTCCACAATCTTGATTTGAACTACGGCACAACGACGACTAATTC TCAGGATTTTGTCTATAGGCCATCTTCCCCACCATGGAACTGA
AA sequence Show only first row Show all	>Lus10036047 pacid=23141276 polypeptide=Lus10036047 locus=Lus10036047.g ID=Lus10036047.BGIv1.0 annot-version=v1.0 MMHTVSSCAHENRMNPSAVAACMAPLLLRPLLAGECELEDDFDGSGDNSAQLLAAANAANNAQAIITTLLEEYDNIFDDENLQRCSISADSRMGNSGTED SSDDETTNMKNNGYHDKENEVDQETDGDAERVLSGKLSETSGSAGSDLYDYKAFAGDDLDVELPRSNQAAAESSNLVVESPQMRDPGVQLLELGKNRKGN ENSFNGTDPLSIVPLGESYRSMGDILSSIDVEPQVPMSPVDSSKEKSAGKATPSNGNGKRSTFWGRSNARKTPSMESVGSSEEELAIQRLEITKNDLRHR IAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQLSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN QQRQHHYGSATDDRYQHIPNHNPQQRFLQQDFDTTLAYVNHERKQRHEEGLSGADWRNNAKGVGQLPGSSSRQGNRKQYIESTSLSDSKSTEASTNLSVD ELCGAVDSAPSTSRPVEVTDYPRHPSAASSALVELTTRLDFFKERRSQLMEQLHNLDLNYGTTTTNSQDFVYRPSSPPWN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	0	1
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	1.0	0.9142
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	2.8	0.8722
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	4.2	0.8406
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	4.9	0.8674
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	4.9	0.8293
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	5.0	0.8541
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	5.5	0.8277
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10029202 [exp]	5.9	0.8389
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	7.5	0.8189
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	8.5	0.8555

Compare expression of checked genes

Lus10036047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.