Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19390 411 / 6e-141 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 381 / 2e-128 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2) AT4G24580 349 / 1e-114 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036167 [exp] 330 / 9e-108 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10005733 [exp] 241 / 3e-79 AT4G24580 350 / 1e-113 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069700 [exp] 436 / 8e-149 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.001G275200 [exp] 426 / 9e-145 AT5G19390 1080 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.002G104300 [exp] 369 / 2e-122 AT4G24580 793 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.005G157400 [exp] 364 / 1e-120 AT4G24580 786 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain
Representative CDS sequence Show only first row Show all	>Lus10036048 pacid=23141036 polypeptide=Lus10036048 locus=Lus10036048.g ID=Lus10036048.BGIv1.0 annot-version=v1.0 ATGAACAATGATTTTCTGCAGAGTGCCTTACCACAAAAGGGTGGTGAAGTGAACCTAACATTAGGAGGAATTGATTTAAATAATTCAGGGAGTGTGGTTG TAAGAGAAGATAAGAAGCTGTTGACTGTTCTATTTCCTGATGGCCGTGATGGACGAGCATTTACACTTAAGGCTGAAACATCAGAAGATTTGTCCGAGTG GAAGGCGGCCCTTGAGCTTGCCCTTGCACAAGCGCCAAGTGCTGCCCTTGTTATGGGGCATAATGGGATTTTTCGAAGCGACACTAACGATGCAATTGAC GGGAGGGATAAGCGCCCTGTGAAATCATTAGTTGTTGGAAGACCAATTTTGCTTGCTCTTGAAGATATTGATGGAAGTCCATCTTTTCTTGAGAAAGCTC TTCGATTTCTTGAAAAATATGGTACTAAAGTAGAGGGAATCCTGAGACAGTCGGCTGATGTTGAGGAGGTCGATAGAAGAGTTCAAGAATATGAGCAAGG TAAAATTGAATTTGAGCCAGACGAGGATGCTCATGTTGTTGGTGATTGTGTGAAGCATGTTCTGAGGGAGCTTCCTTCCTCCCCAGTTCCAGCATCTTGC TGTACCGCGTTGTTGGAGGCCTACAAAATTGATCGGAAGGAAACTCGAATAGCGGCTATGCGGTCTGCGATCGTGGAAACATTTCCTGAACCAAACCGGC GGTTGTTACAGAGGTGA
AA sequence Show only first row Show all	>Lus10036048 pacid=23141036 polypeptide=Lus10036048 locus=Lus10036048.g ID=Lus10036048.BGIv1.0 annot-version=v1.0 MNNDFLQSALPQKGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLSEWKAALELALAQAPSAALVMGHNGIFRSDTNDAID GRDKRPVKSLVVGRPILLALEDIDGSPSFLEKALRFLEKYGTKVEGILRQSADVEEVDRRVQEYEQGKIEFEPDEDAHVVGDCVKHVLRELPSSPVPASC CTALLEAYKIDRKETRIAAMRSAIVETFPEPNRRLLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	1.4	0.9487
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	2.4	0.9467
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	4.2	0.9366
AT2G15900			Phox-associated domain;Phox-li...		Lus10012043 [exp]	5.0	0.9377
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	5.7	0.9255
AT3G60920			unknown protein		Lus10009306 [exp]	6.0	0.9481
AT1G31780			unknown protein		Lus10037281 [exp]	6.3	0.9342
AT5G53480			ARM repeat superfamily protein...		Lus10023246 [exp]	8.8	0.9176
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036215 [exp]	9.4	0.9053
AT2G45540			WD-40 repeat family protein / ...		Lus10009307 [exp]	10.0	0.9383

Compare expression of checked genes

Lus10036048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.