Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46870 213 / 4e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09320 79 / 1e-16 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT3G27750 56 / 3e-09 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT1G13040 57 / 4e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G18475 56 / 5e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G42570 52 / 3e-08 peroxidase family protein (.1) AT5G48730 52 / 8e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 50 / 5e-07 GUN1 genomes uncoupled 1 (.1) AT1G74850 49 / 1e-06 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000892 [exp] 471 / 3e-171 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040756 [exp] 207 / 6e-67 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016476 [exp] 205 / 7e-66 AT3G46870 346 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 56 / 7e-09 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011646 [exp] 53 / 5e-08 AT1G13040 503 / 1e-175 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10022787 [exp] 53 / 9e-08 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036129 [exp] 50 / 5e-07 AT1G13040 573 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017041 [exp] 50 / 5e-07 AT2G36240 436 / 4e-151 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10037592 [exp] 49 / 1e-06 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275000 [exp] 369 / 7e-131 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G038200 [exp] 203 / 2e-65 AT3G46870 326 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G134300 [exp] 103 / 1e-26 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.009G169600 [exp] 78 / 3e-17 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.002G243600 [exp] 59 / 6e-10 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G149400 [exp] 55 / 1e-08 AT2G15980 477 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G090400 [exp] 51 / 2e-07 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G051400 [exp] 49 / 5e-07 AT3G27750 171 / 2e-53 EMBRYO DEFECTIVE 3123, unknown protein Potri.004G074500 [exp] 49 / 1e-06 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G111600 [exp] 48 / 2e-06 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036049 pacid=23141122 polypeptide=Lus10036049 locus=Lus10036049.g ID=Lus10036049.BGIv1.0 annot-version=v1.0 ATGTCGCGTTTGATGTCCAATTTCGTCCTCCTACTCCGCAACTCCTCGTGGGCTCCACGACTCCTGCTGGCTGAAAACTTCTCTAATTTGGCTTCCAGGA CGAGGCCGAGCTTGTCGATATGGAGGCGGAAGAAAGAAATGGGGAAAGAAGGCCTTTTTGCTGCTAAGGAGCTGAAACGTCTACAATCAAATCCCTCGCG CCTCGACCGTTTCATCCATTCCCACGTCTCTCGGCTACTCAAGTCTGATCTCGTAGCTGTGCTAGCTGAGTTCCAGCGCCAAGATCAGGTCTTCCTCTGC ATGAAGTTATATGACGTGATACGCAAAGAGATATGGTATAAGCCGGACATGTTCTTTTACAGGGACATGCTTATGATGCTTGCAAGGAACAAGAAAGTTG ATGAAGCAGAACAAGTTTGGCAAGATTTGAAGAGAGAGCAAGTTTTGTTCGATCAGCATACATTCGGGGACATCATGAGAGCCTTTCTGGACAATGGGTT GCCATCTGAAGCGATGCAGATATATGAGGAAATGAGACAGTCACCTGATCCACCACTGTCTTTGCCCTTCCGAGTGATCTTGAAAGGGCTAATCCCATAT CCGGAGTTAAGGGAGCAAGTGAAAGATGATTTCTTGGAGCTTTTTCCTAGCATGATTGTCTACGACCCAGCTGAGGATCTGTTTGACGATGAAGAATCTA AAAGGGAAAGCGACTTTGATTGA
AA sequence Show only first row Show all	>Lus10036049 pacid=23141122 polypeptide=Lus10036049 locus=Lus10036049.g ID=Lus10036049.BGIv1.0 annot-version=v1.0 MSRLMSNFVLLLRNSSWAPRLLLAENFSNLASRTRPSLSIWRRKKEMGKEGLFAAKELKRLQSNPSRLDRFIHSHVSRLLKSDLVAVLAEFQRQDQVFLC MKLYDVIRKEIWYKPDMFFYRDMLMMLARNKKVDEAEQVWQDLKREQVLFDQHTFGDIMRAFLDNGLPSEAMQIYEEMRQSPDPPLSLPFRVILKGLIPY PELREQVKDDFLELFPSMIVYDPAEDLFDDEESKRESDFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10036049 [exp]	0	1
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	2.6	0.7541
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	12.4	0.6823
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	13.3	0.7067
AT1G26180			unknown protein		Lus10031917 [exp]	14.7	0.7018
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	23.5	0.6519
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	24.7	0.6454
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	27.1	0.6920
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	27.3	0.6999
AT5G63040			unknown protein		Lus10039957 [exp]	27.7	0.6974
AT1G55170			unknown protein		Lus10041450 [exp]	36.8	0.6772

Compare expression of checked genes

Lus10036049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.