Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12180 890 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 887 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 726 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT4G04720 672 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT3G20410 671 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G50700 670 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT4G21940 660 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT5G04870 637 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 636 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT2G17290 635 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000889 [exp] 1012 / 0 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10038460 [exp] 920 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10023346 [exp] 772 / 0 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017537 [exp] 733 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10021531 [exp] 677 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 672 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 660 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 655 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10022986 [exp] 641 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069200 [exp] 904 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 898 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 734 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 732 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.004G015500 [exp] 665 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 665 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G207300 [exp] 640 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.010G244800 [exp] 639 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.009G168600 [exp] 637 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.006G200600 [exp] 636 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10036050 pacid=23141226 polypeptide=Lus10036050 locus=Lus10036050.g ID=Lus10036050.BGIv1.0 annot-version=v1.0 ATGGGAAATTGTTGCTCTAGGGGCAATGAAGGAGATGAAGCCTCCAACGATGAAAAGGGAGAAGACGCACAACAACAGGGAGGAGATAGTAGTAATCCAG GATCATCCAAGATGGCCCCACCAGCTTCTCCTTGCCCATCCAAACCTTCCAAAAATGCCCCGATCGGCCCCGTCCTAGGAAGGCCGATGGAGGACATCAA GTCAACCTACTCCATCGGCAAGGAATTGGGTCGGGGCCAGTTCGGGGTCACACATTTGTGCACCCACAAGGCCAGCGGGGAGCAATTCGCCTGCAAGACC ATAGCAAAGAGAAAGCTAGTAAACAAGGAGGATTTGGACGATGTTCGCCGAGAGGTTCAGATCATGCACCACTTGACCGGTCAACTAAACATCGTGGAGC TCAAAGGTGCTTTCGAGGACAAGCACTCGGTGCATTTGGTGATGGAGTTGTGTGCCGGTGGAGAGCTCTTCGACCGTATCATAGCGAAAGGTCATTACAG CGAGCGAGCTGCGGCTTCGTTGCTTCGAACCATTGTTCAGATTGTGCACACTTGCCATTCCATGGGCGTCATTCATAGAGATCTTAAACCGGAGAACTTC TTGCTCCTTAATAAAGATGAGAGTTCTCCCCTTAAGGCTACCGATTTCGGGCTTTCCGTGTTCTACAAGCCGGGAGAAGTGTTCAAGGACATCGTTGGAA GTGCGTACTACATTGCGCCGGAGGTGTTGAAAAGGAAGTATGGCCCGGAAGCTGATATTTGGAGTATTGGTGTTATGTTGTACATTCTTTTGTCAGGTGT TCCTCCTTTTTGGGCAGAATCCGAGCATGGCATTTTCAATGCGATTCTCCGTGGGCATTGCGATTTTACAAGTGATCCATGGCCGTTGATTTCACCTCAA GCCAAAGATCTTGTACGAAAGATGCTCAACTCGGATCCTAAACAAAGGTTAACGGCTTCTCAAGTTCTAAATCATCCATGGATTAAGGAAGATGGAGAAG CACCAGACGTTCCTCTAGACAATGCTGTATTGGGCAGACTTAAACAATTCAAAGCAATGAACAAGTTCAAGAAAGTTGCTCTAAGGGTTATTGCTGGATG CTTGTCGGAGGAAGAAATCATGGGGCTAAAGGAGATGTTCAAAGGAATGGACACAGACAACAGTGGAACAATCACCCTTGAGGAACTCAAGCTTGGGCTT GCTAAGCAAGGAACTAAGCTTTCTGAAGCTGAAGTTAAACAATTGATGGAAGCAGCGGATGCAGATGGAAATGGAACCATTGACTATGAGGAGTTCATCA CGGCCACAATGCATATGAACAAGATGGATAGAGACGAGCATCTTTACACAGCTTTCCAACATTTCGACAAAGATAATAGCGGGTACATAACAACAGAAGA GCTTCAACAAGCCCTAAGAAGCTTTGGTATAAATGATGATAAAGAACTCAAAGACATTATCTCCGAAGTTGACAACGATCATGATGACAGAATAAACTAC GATGAATTTGTTGCAATGATGAAAAAGGGAAATCCAGAAGCCAATCCAAAAAAACGACGCGACACCGTATTTGTCTGA
AA sequence Show only first row Show all	>Lus10036050 pacid=23141226 polypeptide=Lus10036050 locus=Lus10036050.g ID=Lus10036050.BGIv1.0 annot-version=v1.0 MGNCCSRGNEGDEASNDEKGEDAQQQGGDSSNPGSSKMAPPASPCPSKPSKNAPIGPVLGRPMEDIKSTYSIGKELGRGQFGVTHLCTHKASGEQFACKT IAKRKLVNKEDLDDVRREVQIMHHLTGQLNIVELKGAFEDKHSVHLVMELCAGGELFDRIIAKGHYSERAAASLLRTIVQIVHTCHSMGVIHRDLKPENF LLLNKDESSPLKATDFGLSVFYKPGEVFKDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHCDFTSDPWPLISPQ AKDLVRKMLNSDPKQRLTASQVLNHPWIKEDGEAPDVPLDNAVLGRLKQFKAMNKFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITLEELKLGL AKQGTKLSEAEVKQLMEAADADGNGTIDYEEFITATMHMNKMDRDEHLYTAFQHFDKDNSGYITTEELQQALRSFGINDDKELKDIISEVDNDHDDRINY DEFVAMMKKGNPEANPKKRRDTVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19360		CPK34	calcium-dependent protein kina...		Lus10036050 [exp]	0	1
					Lus10040835 [exp]	3.9	0.7661
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	4.5	0.7217
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10009293 [exp]	7.4	0.6509
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021873 [exp]	8.5	0.6660
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	11.3	0.6570
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	11.3	0.6630
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10026724 [exp]	13.4	0.6598
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	14.5	0.6572
					Lus10030519 [exp]	14.7	0.6343
AT2G29880			unknown protein		Lus10005028 [exp]	16.3	0.6192

Compare expression of checked genes

Lus10036050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.