Plant FIBer expression Database

Lus10036051 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35200 74 / 1e-16 unknown protein
AT1G32690 69 / 2e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G092700
[exp]
134 / 1e-39 AT1G32690 117 / 1e-32 unknown protein
Potri.001G141600
[exp]
126 / 2e-36 AT1G32690 103 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10036051 pacid=23141049 polypeptide=Lus10036051 locus=Lus10036051.g ID=Lus10036051.BGIv1.0 annot-version=v1.0
ATGGCTGCCGCCTACGTTGACGAGGAGCAAGTCTGGAAATGCGCCACCCATCCGTCGAGGCGCCGCCGTATTGGAATCTGCCACCGCTGCCTCAGGGAGC
GTCTGACGGCTCTCTGCCCTGACTGTGCAGACGTCCGTCCCTGCTCGTGCTCCTCCTCTTCCTCATCCTCCACGGAGAGCGCCGAGCCATCGTTGCGGCG
GTCGAGCTCCTTGGCGATTCCTTTCCTGAGATCGTCGAGCCGTCATCCATCAGGTAATTCCGTGAAGAAGACTCCGTCTCCGACGCCGTCGATTTGGTCT
GTTTTGAAAGGAAGCAGGAAGAAGCAATCAGAGGATGTAATCAAGATTAATGATGATGAGATCAAAGAGGTGCCGCGGACGGTGATGATGCGGAAATCGA
GGTCAGTGGCGGTGACGGCGTTAGATTCGGGGAGATCTGATCATCAGTCGAGTAGAGGGTGGCATTTTCCTAGTCCGATGAAGGTATTCCGGCGGCAATC
AAAAACAGGCGGGGGCGTATTGTTGGTACACGAAAGGCCTCCTTTGCCCCGCGGTTAA
AA sequence
>Lus10036051 pacid=23141049 polypeptide=Lus10036051 locus=Lus10036051.g ID=Lus10036051.BGIv1.0 annot-version=v1.0
MAAAYVDEEQVWKCATHPSRRRRIGICHRCLRERLTALCPDCADVRPCSCSSSSSSSTESAEPSLRRSSSLAIPFLRSSSRHPSGNSVKKTPSPTPSIWS
VLKGSRKKQSEDVIKINDDEIKEVPRTVMMRKSRSVAVTALDSGRSDHQSSRGWHFPSPMKVFRRQSKTGGGVLLVHERPPLPRG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35200 unknown protein Lus10036051
[exp]
0 1
AT5G43260 chaperone protein dnaJ-related... Lus10015783
[exp]
1.4 0.8431
AT5G48545 HINT3 histidine triad nucleotide-bin... Lus10025883
[exp]
2.4 0.8325
AT4G28030 Acyl-CoA N-acyltransferases (N... Lus10019975
[exp]
2.6 0.8475
AT5G19590 Protein of unknown function, D... Lus10017733
[exp]
4.5 0.8324
AT3G55950 CCR3, ATCRR3 CRINKLY4 related 3 (.1) Lus10028285
[exp]
5.1 0.7918
AT4G14450 ATBET12 unknown protein Lus10022200
[exp]
6.0 0.8124
AT3G23880 F-box and associated interacti... Lus10023239
[exp]
7.0 0.8096
AT1G02910 LPA1 LOW PSII ACCUMULATION1, tetrat... Lus10036345
[exp]
9.8 0.7891
AT3G05200 ATL6 RING/U-box superfamily protein... Lus10015167
[exp]
10.5 0.8027
AT1G48320 Thioesterase superfamily prote... Lus10006220
[exp]
12.1 0.7654

Lus10036051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.