Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26780 1377 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G274500 [exp] 1606 / 0 AT2G26780 2390 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036052 pacid=23141145 polypeptide=Lus10036052 locus=Lus10036052.g ID=Lus10036052.BGIv1.0 annot-version=v1.0 ATGTCGACGGCGGCAGCCACCGGAAGGTCCGACTCCGATACAGTGGACTTGCTGGATCGTATGCTTACCCAGCTAGCACTATGCGATGACCCAAAGCTGG AACCCTTGCTATCCAAGCTCCTGCCTCTCGCTCTTTCCACTCTGTCCTCTCAGTCCACCGCCGTTCGTAACAAGGTTCTTGAGATTTTAAGACATGTGAA CATAAGAGTGAAAGACCAGCCGGAAATTGGTTTGCCATTGCAAAATTTGTGGACACTGTATCTGGATTCTTCTGCTGCTCCAATGATTAGGAACTTTTGC ATTGTGTACATTGAGATGGCTTTTGATCGAGTAGAACCGAAGGAGAAGGAAAATACGATGCCTTTGCTTCTACAGAACATCTCCAAACTCAGTCCTCAGC ACCAGGACATTATCCTGAGAATTGCAGCTAAGGTTATTGGCGAGTGTCATGCTAGGCAGATTGATGAACATGTTGCTACAAAATATATGTCTTTCAGTAT TTCTCAGGATATGGAATTGTTCATTGATTTCTGCCTTCACGTACTGCTGTATCAACAACCATCTCAGAGTGGAGGTTGTCCGCCTGGGCTTTCATTTTCT CAGAGCAATCGTGTTACTGGAAAGAATCCTTTGAAAATGGATGTGCTGCTGATGATGAAGTTAGGGATTCTGAATGTTATCGAAGCTATCCAGCTCCGTC CAGAACTCGTGTATCCCTTGTATTTAGCTGCTAGTGCAGATATTCAAGAGCCGGTAATTAAGAGAGGGGAACAGCTCCTGAAGAAAAAGGCAGCTGGTGC TAATCTGGATGACCCGAGTTTGCTGAAAAAGTTGTTTACATTGTTAAACGGAAGCATCACTGTTGAAAGTATTGCCCCTGAAGCAAAAGTTGTTCCTGGA AGTGTTGCTTTGAAAGTAAAATTAATGGCAATATTTTGCCGGTCTATTGCTGCAGCAAACAGTTTTCCTGCAACCCTTCAATGCATTTTCACCTGCATAT ATGGGAGTGGTACCACCACGAGATTAAAGCAGATGGGGATGGAATTCACTGTCTGGGTATTTAAACATGTAAGAGCAGTTTCGTTTTGGCTTGAGGCAAA AATTGAGCAGCTGAAGCTTATGGGGCCTGTCATACTGAGTGGTATTCTCAAGCTGCTCAATGGTTACTCATACTCAGAATCAGATGCTGCTGCCAGGGAG ACCAAAACCTTTTGTTTCCAAGCTATTGGACTGCTCGCTCATCGCCTTCCCCATCTATTTAGAGACAAGGTTGACATGGCTGTTCGTCTTTTCGATGCAC TGAAAATGGAGTCGCCTTCTCTACGTGTTGTGATCCAAGAAGCAACAAATTCTCTTGCAGCTGCGTACAAGGGGGCATCTACTGCGGTGCTGGTGGATTT AGAGACACTTCTGCAAAACAATTGTCAAGCGCATTGCCCTAGTCGATTTATTTGTATGCTTGGCGTAGTAGATTCTCGTTTGGACATAAGGGAGTTGGCA TTAGAAAGTCTCTTTCCAGTCAAGGACGAAAAGCATATTACCAGTGAAGATCTCGATATAAAGTACCCTAGCCTTCAAGGAATGTTGGATTATATTTGTA AACAACAGCCGAAGTTGTTGGTATCAAGTGAAGTAGGGGAACATAATCTTCTCTTTCCTTCAGAAATGTATGTCGCAGTGATAAGATTTCTGTTGAAGTG CTTTGAGTCGGAGTTGAAGGTGAACAGTACATCAGGTGGATCATCTGAATTTTTGTCGACAGTGGAGAAAATGTGTACTCTATTAGAACATGGAATGGCA TATGAGGGTTCTACCGAGTTGCATGCTACTGCCTCAAAGACGATTGTAACAGTCAGTTCGTTTCTTCCACAAATGATGGCAATTCGGTATGCACATAGGA TATCGTGGCTAAGACAGTTTTTGAGTCACATAGACCAAGATACCCGTGAATCTGTTGCTCGACTTCTTGGGATAGCTTCCTCTACTCTCCCCATTGGGAT ATCATCTGATCTTATTAAAGAGTTGCTATCCTCAATAAACAGAAGTCATAATATGAGGTTTGAGTTACAGTATGGAACATTATCTGCATTGGGATATATC ACTGCAGATTGTGCATCTAGAATACCTACGATGGAAGAGCCAATGCTTCAAGATATACTCAGATGCTTGACGAATGTTGCTAATTCTGAGAGCCCAGTCT TGGCCTCAATTGCAATGCAAGCTCTTGGTCATATTGGATTACGGGTACCCTTACCACCAATTCCTGATAATGACCGCACAGGTGTTCATGTTCTAGAAGT TTTGCATGAGAAACTAAGCAAATTGCTTTCTGGTGATGATACAAAAGCAATCCAGAGAATTGTTATCTCCCTTGGACATATGTGTATGAGGGAAAAATCA CCTTCCACTCTTAATGCTGCGCTTCAATTAACATTTACACTCTGCCGGAGCAAGGTCGAGGATGTCTTGTTTGCTGCTGGGGAAGCTCTGTCATTTTTGT GGGGTGGTGTCCCCGTTACTGCTGACGTGATTCTTAAAACAAACTATTCTTCTCTTTCTACAAGTTCAAACTTTCTTCTGGCAGATATTAGCTCATCTTT TTCAGATAATAACGCCAGTTCTGGAAATGTTGCTACTGAGGATGACCATGTCACAGTCAGAGATTCAGTTACTAAAAAGCTCTTCAACGAGCTTCTATAC AGCAGCAGGAAAGAAGAGCGGTGTGCTGGAACTGTGTGGCTGTTGTCTTTGACTATGTACTGTGGCCATCATCCAAGTATTCAGAAAATGCTTCCGGAAA TTCAGGAGGCGTTTTCTCACTTAATTGGTGAACAAAATGAACTTACACAAGAATTAGCATCTCAAGGCATGAGTGTCGTATATGATCTTGGTGATGCATC AATGAAGAAGAGCTTGGTAGATGCACTCGTTGGCACTTTAACTGGTTCGGGAAAGAGGAAAAGAGCTATCAAGCTGGAAGGAGATACAGAAATCTTTCAT GAAGGGACTATTGGTGAAAGTCCTACTGGTGGCAAACTTAGCACTTACAAGGAGCTGTGCAGTCTTGCAACTGAGATGGGCCAACCAGACTTGGTTTACA AGTTCATGGACCTTGCTAATCATCAAGCGTCTTTGAATTCTAAGAGAGGTGCTGCTTTTGGTTTCTCAAAAATAGCGAAACATGCTGGGGATGCTCTCCA ACCCCATTTACGGTTACTAATTCCGAGGCTCATTAGGTATCAGTATGATCCTGATAAAAACGTGCAGGATGCCATGTCACACATATGGAAGTCACTGGTA GCTGAACCTAAGCAGACAATTGATAAATATTTGGACCTTATTATTGATGACTTGATAAGTCAGTGCGGATCCAGGCTCTGGCGTTCACGTGAGGCCTCCT GTCTTGCCCTTGCAGATATTATCCAAGGGCGGCCATACAATCAGGTGGGGAAGCATTTGAAGGGTGCTGGTATTGCACTTCGTCCACATCTGCCCGATTT AATATGTTGCATGCTGGAAAGTTTGTCTAGTCTTGAAGACCAAGGTCTCAATTATGTCGAGCTCCATGCCGCAAATGTTGGAATCCAGACAGAAAAGCTG GAGAGTTTGCGAATTTCGATAGCAAGAAGCTCTCCAATGTGGGAAACATTAGATCTATGCATTAATGTTTTGAATGCAGAATCATTAGATCTGCTAGTGC CACGTCTTGCTCAATTGGTCAGATCAGGAGTTGGCCTCAACACTAGGGTTGGTGTAGCCAGTTTTATCAGTTTACTAGCTCCCAAAGTTGGTGCTGAGAT AAAGCCGTTCACAAGCATGTTAATGAGACTTTTGTTTCCAGTTGTTCTGTCAGAGAGAAGCATCGCTGCAAAGCGTGCATTTGCAAGTGCTTGTGCTATT GTATTGAAGCATACAGGCTCTTCTCATGCCCAACGATTAATTGAAGACACAGTTGCTTTGCATACTGGTGATAAGAACGCACAGATCTCTTGTGCTGTTC TCTTGAAGAGCTATTCATCTGTGGCATCTGATGTGATGAGTGGATATCATGCGACAGTTTTTCCGATTATATTTATTTCAAGATTTGAGGATGATAAGCA TATTTCTGAAATATATGAGGAGTTGTGGGAGGACAGCACCAGTGGGGAACGTGTGACCCTTCAGTTGTACTTGGAAGAGATTGTTTCTCTTGTTAGTGAA GGACTTGCATCATCATCATGGGCAAATAAAAGAAAGTCTGCCCAAGCAATTTCCAAGCTTACTGAAGTTTTGGGTGAATCGCTGTCTTCTCATTACCGTA TTCTACTTGAATCTCTTATGAAAGAGCTTCCTGGTCGTTTGTGGGAGGGGAAGGATGCTCTTCTACATGCTGTTGGTGCACTTTGCACCTCTTGCCATAA CGTAATTTTCTCTGAAAATCCAGCCGCTGCTAACGAAATTCTAAGTATTGTGTCTTCTGCATGCACTAAAAGATCAAAGAAATACCGTGAAGCTGCATTC TCTTCACTTGACCAGGTTATAAAAGCCTTTGGTTGTCCAGAGTTCTTCAATGTCATTTTCCCGACATTATCTGGAATGTGCAACTCAGCTGCTGCCAATA AATCAGCGCCTGCACCCATGATAATTGATGGTCCTAAAGCAGAACCAGATGATGGTGAGGAGTCTTCTGTTCCGGTGGATAAAGTCCTGAGCTGCATCAT GTCTGCGGTTCATGTTGCAAATGTTGACGATATCCTTCAACAGAGAGCGAACTTGATGCAAGTTCTCTTGGTTCCTTTCACTCCCGGGTTCCAGTGGATA GTTAAAATGGCAGCATTTTCGTTAGTTAAGGAATTATGCTCAAGGCTGGACAGCATCTTAAACGACTCTCGCTGGCAATCTCAGCATGAAAGCATGACTT CATTGGTTAAGGAGCTGTTCCATTCATTATCACCCAAGATAGTTGAATGCATAGCCACTGTAAAGATTGGTCAGGTTCATGTTGCTGCATCTGATTGCCT GGTGGAGATGAGCAAACTGGTGAGCCGGGTATCGCCATTGAAGTGGGGAGATGTGGGGTATAAAGAAGAGCTGCTTCATCAATATGAGGTTGAGAAGAAC CAGGAGGCTAAATCCTACTTGAAGAAATGCATTGACATGTTTGAATAA
AA sequence Show only first row Show all	>Lus10036052 pacid=23141145 polypeptide=Lus10036052 locus=Lus10036052.g ID=Lus10036052.BGIv1.0 annot-version=v1.0 MSTAAATGRSDSDTVDLLDRMLTQLALCDDPKLEPLLSKLLPLALSTLSSQSTAVRNKVLEILRHVNIRVKDQPEIGLPLQNLWTLYLDSSAAPMIRNFC IVYIEMAFDRVEPKEKENTMPLLLQNISKLSPQHQDIILRIAAKVIGECHARQIDEHVATKYMSFSISQDMELFIDFCLHVLLYQQPSQSGGCPPGLSFS QSNRVTGKNPLKMDVLLMMKLGILNVIEAIQLRPELVYPLYLAASADIQEPVIKRGEQLLKKKAAGANLDDPSLLKKLFTLLNGSITVESIAPEAKVVPG SVALKVKLMAIFCRSIAAANSFPATLQCIFTCIYGSGTTTRLKQMGMEFTVWVFKHVRAVSFWLEAKIEQLKLMGPVILSGILKLLNGYSYSESDAAARE TKTFCFQAIGLLAHRLPHLFRDKVDMAVRLFDALKMESPSLRVVIQEATNSLAAAYKGASTAVLVDLETLLQNNCQAHCPSRFICMLGVVDSRLDIRELA LESLFPVKDEKHITSEDLDIKYPSLQGMLDYICKQQPKLLVSSEVGEHNLLFPSEMYVAVIRFLLKCFESELKVNSTSGGSSEFLSTVEKMCTLLEHGMA YEGSTELHATASKTIVTVSSFLPQMMAIRYAHRISWLRQFLSHIDQDTRESVARLLGIASSTLPIGISSDLIKELLSSINRSHNMRFELQYGTLSALGYI TADCASRIPTMEEPMLQDILRCLTNVANSESPVLASIAMQALGHIGLRVPLPPIPDNDRTGVHVLEVLHEKLSKLLSGDDTKAIQRIVISLGHMCMREKS PSTLNAALQLTFTLCRSKVEDVLFAAGEALSFLWGGVPVTADVILKTNYSSLSTSSNFLLADISSSFSDNNASSGNVATEDDHVTVRDSVTKKLFNELLY SSRKEERCAGTVWLLSLTMYCGHHPSIQKMLPEIQEAFSHLIGEQNELTQELASQGMSVVYDLGDASMKKSLVDALVGTLTGSGKRKRAIKLEGDTEIFH EGTIGESPTGGKLSTYKELCSLATEMGQPDLVYKFMDLANHQASLNSKRGAAFGFSKIAKHAGDALQPHLRLLIPRLIRYQYDPDKNVQDAMSHIWKSLV AEPKQTIDKYLDLIIDDLISQCGSRLWRSREASCLALADIIQGRPYNQVGKHLKGAGIALRPHLPDLICCMLESLSSLEDQGLNYVELHAANVGIQTEKL ESLRISIARSSPMWETLDLCINVLNAESLDLLVPRLAQLVRSGVGLNTRVGVASFISLLAPKVGAEIKPFTSMLMRLLFPVVLSERSIAAKRAFASACAI VLKHTGSSHAQRLIEDTVALHTGDKNAQISCAVLLKSYSSVASDVMSGYHATVFPIIFISRFEDDKHISEIYEELWEDSTSGERVTLQLYLEEIVSLVSE GLASSSWANKRKSAQAISKLTEVLGESLSSHYRILLESLMKELPGRLWEGKDALLHAVGALCTSCHNVIFSENPAAANEILSIVSSACTKRSKKYREAAF SSLDQVIKAFGCPEFFNVIFPTLSGMCNSAAANKSAPAPMIIDGPKAEPDDGEESSVPVDKVLSCIMSAVHVANVDDILQQRANLMQVLLVPFTPGFQWI VKMAAFSLVKELCSRLDSILNDSRWQSQHESMTSLVKELFHSLSPKIVECIATVKIGQVHVAASDCLVEMSKLVSRVSPLKWGDVGYKEELLHQYEVEKN QEAKSYLKKCIDMFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	0	1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	1.0	0.9231
AT2G35920			RNA helicase family protein (....		Lus10009660 [exp]	2.2	0.9007
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	2.4	0.9166
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	3.2	0.9228
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	5.5	0.8874
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10028139 [exp]	6.3	0.8219
AT3G06670			binding (.1.2)		Lus10037742 [exp]	7.0	0.8872
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	7.7	0.8791
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	7.9	0.8799
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	8.5	0.8780

Compare expression of checked genes

Lus10036052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.