Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44820 124 / 7e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026825 [exp] 203 / 9e-68 AT2G44820 100 / 5e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G075500 [exp] 127 / 3e-37 AT2G44820 107 / 5e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036053 pacid=23141076 polypeptide=Lus10036053 locus=Lus10036053.g ID=Lus10036053.BGIv1.0 annot-version=v1.0 ATGAAGAATTGGAGGAACCAAACTAGCCGCAGCGGCGGTGCTAAAGATGCCGATAAAAAAGAAGATGCCGATCCAGAATCCCATGTATTGAGCTTCAAGC AGATTATGCAGGATGCCAACCTTTTCGGTGCTTTTACATGGAAAGAAAGGAAGCATATGGAAAACCAGAAAGTTGTTGAACTTGGTGGCAAGCCTGTCAA GAAGCAAAGGCTCCCTTTAAGTGTGGCTCGCCTTCAAATGAAGAATCAGAAGAAAAGGGATGAAAAAATGCTCGCAGAGGATTTGGCTCTTGGGCGGTTC AAGAGTAAGACCAGGGGCGGTGCTCGTAAATTCGGAGACAATGGAAAACCTGAGAATCGGGTGCTTAAATCTACGGAGGGGTTCTTCAAGAATGGTGTAC TGGACGTGAAAGATCTGCTGAAGTCGGGCGGTCCATCATCATCTGAAGGCCGTTTTTCTGACGGTCCTAAGATGATGGACAGAGGGATGAAACAGAAGAG TGGAGGTGGTGGGAAAAAGAAGAAAAATGGCAAGGGTAAGGGTAAAGGTAAAGGTAAGAAGAGACATTGA
AA sequence Show only first row Show all	>Lus10036053 pacid=23141076 polypeptide=Lus10036053 locus=Lus10036053.g ID=Lus10036053.BGIv1.0 annot-version=v1.0 MKNWRNQTSRSGGAKDADKKEDADPESHVLSFKQIMQDANLFGAFTWKERKHMENQKVVELGGKPVKKQRLPLSVARLQMKNQKKRDEKMLAEDLALGRF KSKTRGGARKFGDNGKPENRVLKSTEGFFKNGVLDVKDLLKSGGPSSSEGRFSDGPKMMDRGMKQKSGGGGKKKKNGKGKGKGKGKKRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44820			unknown protein		Lus10036053 [exp]	0	1
AT5G56710			Ribosomal protein L31e family ...		Lus10037703 [exp]	1.4	0.9503
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10022882 [exp]	2.8	0.9304
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	5.5	0.9417
AT5G11760			unknown protein		Lus10008481 [exp]	5.7	0.8877
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	8.4	0.9129
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	10.1	0.9312
AT3G53740			Ribosomal protein L36e family ...		Lus10016466 [exp]	11.0	0.9114
AT4G14320			Zinc-binding ribosomal protein...		Lus10000176 [exp]	11.4	0.9290
AT5G51960			unknown protein		Lus10041422 [exp]	12.0	0.8867
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	12.0	0.9129

Compare expression of checked genes

Lus10036053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.