Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23100 134 / 5e-42 GroES-like family protein (.1) AT1G14980 129 / 5e-40 CPN10 chaperonin 10 (.1) AT5G20720 52 / 2e-08 CHCPN10, ATCPN21, CPN21, CPN20 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026822 [exp] 96 / 4e-24 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3) Lus10016196 [exp] 49 / 1e-07 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10021244 [exp] 47 / 8e-07 AT5G20720 372 / 1e-131 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10013607 [exp] 46 / 1e-06 AT5G20720 373 / 5e-132 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G274300 [exp] 138 / 2e-43 AT1G14980 165 / 6e-55 chaperonin 10 (.1) Potri.008G130500 [exp] 137 / 5e-43 AT1G23100 157 / 7e-52 GroES-like family protein (.1) Potri.010G111600 [exp] 135 / 2e-42 AT1G23100 155 / 1e-50 GroES-like family protein (.1) Potri.009G068900 [exp] 133 / 2e-41 AT1G14980 161 / 3e-53 chaperonin 10 (.1) Potri.018G063200 [exp] 51 / 3e-08 AT5G20720 383 / 5e-136 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.006G138600 [exp] 49 / 2e-07 AT5G20720 395 / 1e-140 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF00166 [flax] [poplar] Cpn10 Chaperonin 10 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10036055 pacid=23141250 polypeptide=Lus10036055 locus=Lus10036055.g ID=Lus10036055.BGIv1.0 annot-version=v1.0 ATGGCGAAGCGTTTGATTCCGGCCTTGAATCGGGTTTTGATCGAGAAGATTGTTCCTCCTTCCAAAACCACTGCTGGAATCCTTCTCCCTGAAAAGACTT CCAAGCTCAACTCCGGAAAAGTAGTTGCAGTGGGACCTGGAATTCGTGACAAGGAGGGACAGCACATCCCTGTAGCTGTGAAGGAAGGAGACACTGTTCT TTTGCCAGAGTATGGTGGCATGGAAGTGAAGCTCGGTGACAAAGAATTTGAACTTGCCTGTGGGTTAAGCAATGATGAACAAACTAACGAACTATGCGTT GTGGTTTTGGTCACTGTTACAGGTACCATCTTTTCCGGGATGAGGACATTCTTGGAACTCTTCACGAGTGATGCAGAGTACACAAGATGTGATGCTCGAG ACTGA
AA sequence Show only first row Show all	>Lus10036055 pacid=23141250 polypeptide=Lus10036055 locus=Lus10036055.g ID=Lus10036055.BGIv1.0 annot-version=v1.0 MAKRLIPALNRVLIEKIVPPSKTTAGILLPEKTSKLNSGKVVAVGPGIRDKEGQHIPVAVKEGDTVLLPEYGGMEVKLGDKEFELACGLSNDEQTNELCV VVLVTVTGTIFSGMRTFLELFTSDAEYTRCDARD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	0	1
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	1.4	0.9142
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011902 [exp]	3.5	0.9011
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	4.9	0.9028
AT4G31930			Mitochondrial glycoprotein fam...		Lus10018327 [exp]	6.9	0.8541
AT3G07425			unknown protein		Lus10020406 [exp]	8.4	0.8893
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	9.4	0.8880
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	10.9	0.9034
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	12.8	0.8848
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	14.3	0.8833
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	14.4	0.8873

Compare expression of checked genes

Lus10036055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.