Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26800 590 / 0 Aldolase superfamily protein (.1.2.3) AT5G23010 50 / 2e-06 MAM1, IMS3 2-ISOPROPYLMALATE SYNTHASE 3, methylthioalkylmalate synthase 1 (.1) AT5G23020 44 / 0.0003 IMS2, MAM-L, MAM3 METHYLTHIOALKYMALATE SYNTHASE-LIKE, 2-isopropylmalate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026823 [exp] 688 / 0 AT2G26800 605 / 0.0 Aldolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068600 [exp] 647 / 0 AT2G26800 575 / 0.0 Aldolase superfamily protein (.1.2.3) Potri.006G036800 [exp] 495 / 4e-174 AT2G26800 471 / 4e-165 Aldolase superfamily protein (.1.2.3) Potri.001G274004 [exp] 192 / 6e-60 AT2G26800 186 / 2e-58 Aldolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00682 [flax] [poplar] HMGL-like HMGL-like
Representative CDS sequence Show only first row Show all	>Lus10036056 pacid=23141020 polypeptide=Lus10036056 locus=Lus10036056.g ID=Lus10036056.BGIv1.0 annot-version=v1.0 ATGTCAGTTGTTGATATAATGCTAGCAAAGAAGGCCATGCATCTCTGTTCATGGCAGAGAACTAAACTGTTGCGTGCAATTCCAGTTTCCCTTCTTGAAC TTTCTTCAGCAATGTCGAGTTTGGAGGAGCCCCTTGGCTTTGACAAGTTGCCTAGCATGAGTACCATTGACCAGATTCAGAGGTTCTCATCTGGTGCTTG CCGGCCCAGTGGTGATGATTTGGGAATGGGACATTGTTGGATCGATGGAAGGAATTGCAGCTCATCCAACAGTTGTGACGATGACTTTGACTATACACGA GACACCTTTCCCTGGAGAAGGCAAACAAAAGGTCTGGCAAATGGCGAATCCTTCATGCGAAGGACTAGGAGTACGGGTGGGAATCATATTGCTCATGGGA GTATTCGTCATTCACGATACTTTTCCAATTATCATAGTGACACCAAGAATAGTGACAAAGATATACGAGGCACAGAAAATAAGTTACTGAAAGGTATACC GAAATTCGTGAAGATAGTAGAAGTTGGACCGAGGGACGGATTACAAAATGAGAAAAATATTGTACCTACGGATGTCAAGATTGAATTGATTCGTAGGCTA GTATCTTCTGGCTTGCCAGTCGTGGAAGCTACTAGTTTTGTATCACCTAAATGGGTTCCTCAGCTTGCAGATGCAAGAGACGTGATGAAAGCAGTTCATA GTTTGGAGGGCTCCAGATTACCTGTTCTGACACCTAACTTAAAGGGATTTGATGCTGCTATCGCAGCAGGGGCTAAGGAAGTAGCCATTTTTGCATCAGC TTCTGAGGCATTTTCAAAGTCCAATATTAACTGTAGCATTGAAGAAAGCCTTGTTCGTTATCGCTCTGTTACCCAAGCAGCGAAAGAACACTCTATCCCT GTTCGTGGATATGTGTCATGTGTTGTTGGATGTCCGGAAGAAGGGGCAGTCTCTCCTACCAAAGTAGCCTATGTATCAAAGGCGCTTTATGAGATGGGTT GCTATGAAATTTCTCTGGGAGATACAATTGGTGTTGGTACACCTGGAACCGTTGTGCCAATGCTTGAAGCTGTATTGGCAGTTGTTCCCGTAGAGAACAT TGCTGTCCACTTCCATGATACATACGGGCAGTCTCTTCCAAATATTTTAGCATCTCTCCAGATGGGTATTAGCACTGTGGACTCCTCGATTGCTGGTTTG GGCGGGTGCCCGTATGCTAAGGGAGCGTCGGGGAATGTCGCAACAGAAGATGTCGTGTACATGCTCAATGGCCTCGGGGTGAAGACGAATGTGGATCTGA CGAAGCTACTCTCAGCGGGGGAGTTCATCAGCAAGCAGTTAGGCCGGGCACCGGGATCCAAGGCAGCCATTGCTTTGAGCCGAGTCATAGCTGATGCATC CAAAATTTGA
AA sequence Show only first row Show all	>Lus10036056 pacid=23141020 polypeptide=Lus10036056 locus=Lus10036056.g ID=Lus10036056.BGIv1.0 annot-version=v1.0 MSVVDIMLAKKAMHLCSWQRTKLLRAIPVSLLELSSAMSSLEEPLGFDKLPSMSTIDQIQRFSSGACRPSGDDLGMGHCWIDGRNCSSSNSCDDDFDYTR DTFPWRRQTKGLANGESFMRRTRSTGGNHIAHGSIRHSRYFSNYHSDTKNSDKDIRGTENKLLKGIPKFVKIVEVGPRDGLQNEKNIVPTDVKIELIRRL VSSGLPVVEATSFVSPKWVPQLADARDVMKAVHSLEGSRLPVLTPNLKGFDAAIAAGAKEVAIFASASEAFSKSNINCSIEESLVRYRSVTQAAKEHSIP VRGYVSCVVGCPEEGAVSPTKVAYVSKALYEMGCYEISLGDTIGVGTPGTVVPMLEAVLAVVPVENIAVHFHDTYGQSLPNILASLQMGISTVDSSIAGL GGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLTKLLSAGEFISKQLGRAPGSKAAIALSRVIADASKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	0	1
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	1.0	0.9352
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	1.4	0.8827
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	2.2	0.8650
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	2.4	0.8741
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	6.0	0.8571
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	6.5	0.8529
AT1G74780			Nodulin-like / Major Facilitat...		Lus10033115 [exp]	7.2	0.8210
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	8.9	0.8495
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	11.0	0.8488
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	14.1	0.8275

Compare expression of checked genes

Lus10036056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.