Plant FIBer expression Database

Lus10036057 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26810 192 / 5e-62 Putative methyltransferase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026822
[exp]
322 / 5e-110 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G068400
[exp]
209 / 5e-69 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10036057 pacid=23141108 polypeptide=Lus10036057 locus=Lus10036057.g ID=Lus10036057.BGIv1.0 annot-version=v1.0
ATGAAGGAAGGAGAAGAGGAAGAAGAAGAGATTGTTTGTTTAGACGAATCGTTCTTCATCAATGACGATTACCAGTTGACGAATTTCACGTTTGGGTCTC
ACTCTCTTCAGTTGCTGTGTCTTCAGACTGCTTCTAGAGTCACTGGTATACTTTGCAGTAAATTTTGTAAAAGAGTAGTGTTAACAGACCATAATGATGA
AATTCTTAAGAAGAACGTAGGTATCCAGTCATCCTCCGAGAATCCTGATTGTTGTGCTGAATTACATGCTGAGAAGCTAGACTGGGGAAACTCAGATCAA
CATTTACGTTTTCAGCAAGCAAGCATCCCTCTGCTTTTCGATACTGTGGAACAGTTACTTCGCTTTCAAAGAGGCAAATGCAGATTCATACTGGCCTATG
TATCCCGGGCTAAAGTCATGGACTCTTTAGTAGTGAAAGAAGCCACTCAACATGGATTGAAAGTGCATGAAGTAGCCGGTACCCGATCCATTGTACGCAA
TCATGAAGGAATGATTTTCGACATGTCTCTCCTGTAG
AA sequence
>Lus10036057 pacid=23141108 polypeptide=Lus10036057 locus=Lus10036057.g ID=Lus10036057.BGIv1.0 annot-version=v1.0
MKEGEEEEEEIVCLDESFFINDDYQLTNFTFGSHSLQLLCLQTASRVTGILCSKFCKRVVLTDHNDEILKKNVGIQSSSENPDCCAELHAEKLDWGNSDQ
HLRFQQASIPLLFDTVEQLLRFQRGKCRFILAYVSRAKVMDSLVVKEATQHGLKVHEVAGTRSIVRNHEGMIFDMSLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26810 Putative methyltransferase fam... Lus10036057
[exp]
0 1
AT4G26210 Mitochondrial ATP synthase sub... Lus10001771
[exp]
13.7 0.8597
AT3G17300 EMB2786 unknown protein Lus10037835
[exp]
15.5 0.8579
AT1G73430 sec34-like family protein (.1.... Lus10001793
[exp]
15.7 0.8356
AT4G29430 RPS15AE ribosomal protein S15A E (.1) Lus10000975
[exp]
20.3 0.8447
AT2G35736 unknown protein Lus10028935
[exp]
22.7 0.8292
AT3G05870 APC11 anaphase-promoting complex/cyc... Lus10015126
[exp]
23.7 0.8210
AT1G26750 unknown protein Lus10019740
[exp]
26.9 0.8421
AT1G61700 RNA polymerases N / 8 kDa subu... Lus10008095
[exp]
28.7 0.8099
AT5G12080 ATMSL10, MSL10 mechanosensitive channel of sm... Lus10011954
[exp]
31.9 0.7885
AT4G26210 Mitochondrial ATP synthase sub... Lus10007995
[exp]
40.9 0.8336

Lus10036057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.