Plant FIBer expression Database

Lus10036058 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026661
[exp]
162 / 1e-45 ND /
Lus10004651
[exp]
142 / 3e-39 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10036058 pacid=23141195 polypeptide=Lus10036058 locus=Lus10036058.g ID=Lus10036058.BGIv1.0 annot-version=v1.0
ATGGTTAGAAGCACCGCCATCGACCTATTTGCACAATCATCGCTGAAAAGACCAAGAATAGACGACGAGAAAACCCGAATTGATTTTGATCTCTCGCAAG
ATGAGGTGGAGGTTGCAGTAACCTTTTTGACCTTGGTGGATGCGCCTAAAGATGGCACCATGGTAATGAATGGAGAGGGTGAATCAAGATTTAGAAAACT
GGTTGTCTATGTCCTTGATTGTGTAGCTAGAGAGGAGATTGAAGGGGACCATCAGGCCTTCAACAATGCAGCGGATCCCACCAGATCCGTTACCGATAAA
GAGATCAGTGAAGAGGATAGCCCTAGGGTCGATGATGGTACAAATCTGACTAGGTTTCCTAGTAGCGAGGTCGACAACATCGAGTTCACATATGTTGCTT
CAGTGCAAGAAGAAGTTGACGTGGCTGGTCCTAAAGATGTTAATCATACTAGCACTTATGGCAAGAGCAACGGTGTTGAGTCTGTCACTGGAGTTGTTAC
CGCTGCAAACTCGTACATGCCCCCCATGTACGATGAGGAGGAGACATATGAGGAGGCTAGTACGGGCTTGGTCGACGAAAACATGCTTGGGGACCTCACC
ATTCCGGTTTCACCAAGTGCTGAAGATAATGATCATACCAACACCGATGTACCAGAGCAGCTAAGGATCTCAATCCAGGAGGACACAAAGAAGGTCGGTA
AGGATCACATTGGCAGCAACGAGGGAGAAGATTTATCTTGGTGGGAATCTCTCCACTTGAAAAGCATATTGCATAGTAATGTCTTAAGATATGTAACTTA
G
AA sequence
>Lus10036058 pacid=23141195 polypeptide=Lus10036058 locus=Lus10036058.g ID=Lus10036058.BGIv1.0 annot-version=v1.0
MVRSTAIDLFAQSSLKRPRIDDEKTRIDFDLSQDEVEVAVTFLTLVDAPKDGTMVMNGEGESRFRKLVVYVLDCVAREEIEGDHQAFNNAADPTRSVTDK
EISEEDSPRVDDGTNLTRFPSSEVDNIEFTYVASVQEEVDVAGPKDVNHTSTYGKSNGVESVTGVVTAANSYMPPMYDEEETYEEASTGLVDENMLGDLT
IPVSPSAEDNDHTNTDVPEQLRISIQEDTKKVGKDHIGSNEGEDLSWWESLHLKSILHSNVLRYVT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036058
[exp]
0 1
AT1G16930 F-box/RNI-like/FBD-like domain... Lus10023037
[exp]
1.0 0.8969
AT3G14770 SWEET2, AtSWEET... Nodulin MtN3 family protein (.... Lus10002600
[exp]
1.7 0.8364
AT5G41720 unknown protein Lus10006473
[exp]
2.4 0.8878
AT4G37710 VQ motif-containing protein (.... Lus10019270
[exp]
13.9 0.7459
AT2G43840 UGT74F1 UDP-glycosyltransferase 74 F1 ... Lus10017825
[exp]
15.0 0.7456
AT2G04865 Aminotransferase-like, plant m... Lus10003728
[exp]
15.3 0.8011
AT1G13570 F-box/RNI-like superfamily pro... Lus10028368
[exp]
15.7 0.7213
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Lus10019534
[exp]
16.2 0.7638
AT4G28050 TET7 tetraspanin7 (.1) Lus10038964
[exp]
16.4 0.8278
AT5G10530 Concanavalin A-like lectin pro... Lus10042310
[exp]
17.4 0.7429

Lus10036058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.