Plant FIBer expression Database

Lus10036059 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26840 241 / 3e-79 unknown protein
AT3G43910 112 / 2e-30 unknown protein
AT3G43900 41 / 5e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G068300
[exp]
302 / 2e-103 AT2G26840 264 / 2e-88 unknown protein
PFAM info
Representative CDS sequence
>Lus10036059 pacid=23141044 polypeptide=Lus10036059 locus=Lus10036059.g ID=Lus10036059.BGIv1.0 annot-version=v1.0
ATGAAACTCCAAAATCATCCGTCTTCAAACCCTCAAATTCCGTTCATGCGCTTCCCAGGAGTGAGGCCCTTCTTCTTCAATGCATTTTCCTCCGCCATTC
CTACCAGCAACAGAGGCTGCGCTTCTAGAGTTACAGCACATATCAAGACCACGACTGTTGCAGCAGCTGAAGTTTCACGGCTTAAGGAGAACTGGCTAGA
CTCACTCACTTGCCCTCTTCCTGCTTTGCTGGATGAAGAAGACAGACTTTCTAGCACGGACACTGGTGGGGACTCGTCATCCGGTTCGGGCTCAAATTGG
GTTATAGGTATTGACCCGGATCTCTCCGGTGCTATTGCGCTGTTGAAAACTGAAGAATCCGTGTGCTCCGCGCAGGTGTATGATGCTCCTAGCTTGAAAG
TGATGGTTGGCAAACGGATCCGAAAGCGATTAGATGCCAAGTCCATTGTTCAGTTGCTACGCAGTTTTGATTCACCGGTTGGAACTACTGCATATATAGA
ACAATCAATTCCATATCCACAAGACGGGAAACAGGGCTGGTGGAGTGGAGGATTTGGTTATGGATTGTGGATTGGAATATTGGTTGCCTCTGGATACTCG
GTGGTACCTGTTCCATCTCTGTCATGGAAGAATAAATTTCGACTCGCTGGGAAAAATGCAACTAAGGATGAGAGTCGGAGAATGGCATCAATGTTATTTC
CATCATTGACTTCCTCGCTTACAAGGAAAAAGGATCACGGGAGAGCGGAGGCTTTGCTAATTGCTGCATATGGTAAAGGCATGATGATAAACGAGGCATT
TGATGTAGAGGAATTGCCTTCGGTGGATGCGTGA
AA sequence
>Lus10036059 pacid=23141044 polypeptide=Lus10036059 locus=Lus10036059.g ID=Lus10036059.BGIv1.0 annot-version=v1.0
MKLQNHPSSNPQIPFMRFPGVRPFFFNAFSSAIPTSNRGCASRVTAHIKTTTVAAAEVSRLKENWLDSLTCPLPALLDEEDRLSSTDTGGDSSSGSGSNW
VIGIDPDLSGAIALLKTEESVCSAQVYDAPSLKVMVGKRIRKRLDAKSIVQLLRSFDSPVGTTAYIEQSIPYPQDGKQGWWSGGFGYGLWIGILVASGYS
VVPVPSLSWKNKFRLAGKNATKDESRRMASMLFPSLTSSLTRKKDHGRAEALLIAAYGKGMMINEAFDVEELPSVDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26840 unknown protein Lus10036059
[exp]
0 1
AT4G21060 Galactosyltransferase family p... Lus10036154
[exp]
2.4 0.8420
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Lus10029347
[exp]
3.5 0.8527
AT1G08750 Peptidase C13 family (.1.2.3) Lus10005520
[exp]
3.5 0.8270
AT1G48320 Thioesterase superfamily prote... Lus10043043
[exp]
4.9 0.7827
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Lus10033990
[exp]
6.5 0.8023
AT1G15215 SHH1, DTF1 SAWADEE homeodomain homolog 1,... Lus10038276
[exp]
7.1 0.7735
AT5G27460 Tetratricopeptide repeat (TPR)... Lus10020948
[exp]
9.4 0.8135
AT3G57650 LPAT2 lysophosphatidyl acyltransfera... Lus10042356
[exp]
11.4 0.8133
AT1G62400 HT1 high leaf temperature 1, Prote... Lus10015541
[exp]
16.4 0.7735
AT5G58610 PHD finger transcription facto... Lus10003352
[exp]
16.9 0.7724

Lus10036059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.