Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026821 [exp] 465 / 3e-165 ND 41 / 0.001
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068200 [exp] 51 / 4e-07 AT2G26530 49 / 3e-06 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.001G274000 [exp] 48 / 4e-06 AT2G26530 61 / 3e-10 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036060 pacid=23141208 polypeptide=Lus10036060 locus=Lus10036060.g ID=Lus10036060.BGIv1.0 annot-version=v1.0 ATGGATTTCTCTGGCGACGATAATTCCTCCTACATGACCGCCGCAACGCCCAGCTCCTCCTCAAGGTTCGCAGACAGTTTCCGTTCCTTCGACCCGCCGT CGACAAAATCCAACTCCTCCCCCAATTACAATTTCGCCGTCGACGATTTTGAATCTTCCACCGTCAGCGCTCGTTTCTACGACGAATGCAGCTACCTCGA CGTCCATTCCGACTTCGAAACCTGCTCCGACACCCAGCACCTGATCATGCTGCATCGCGAAAACCGAACGGCCCAATTGAAGCCTCCACCTGCTCGCCAG TCCTTCGGAGGAGCAGGAGGAGGAGAGACGGGGAAAAGGTCATCGACGCCTACAAGGAGGAGATCCGGATTACACGTCCACCGTCGGAGCCTTTGGAATG ACGATTTTGACCCTTTCACGGCCGCCCTTAAAAACGTCAGGGAAGGAGGAGAGACCGGCGGAAAGAACAGAGGCGGCGGGAATCATAGACGGGTGATGTC GGATTCTCCTGGGCCTGGTGAAGTAAAGCCCAAGCCTACGCTGAACTGGGTTAGGAGCATGCCGAGAGTGAGATCGGAAAGCCCAATACCAAGTCCTAGC CCGATGAAGTCATCGCCGCAGCCCAAAGGAGTGCTGTACGCGAGACACACCAGGCTGGTTAAAATGGACTCCAAAAAGGCCCATGATGACTACGAGGAAG GAATGATGGCTTCCTGTAATTGTCATGCTGGGAGTAAGAGGGAAATGTTAAGGAGCCTCATGGTGTCAATGAAGGGGAGAGGTGAGGATGAGGAGGATGG GGAATTGAAGAAGCAAGAAGCCGAACCGCCTCGTACGAAAATGTCGAGGAGGAAGAGGTTGATGAGAAAGCTGAGCTTTAAGTCAGGCGGGCATCGAGAT GTCGATGTATCGGAAAATGCATCGGATGCCATTGGGACGGGGAAGAAATTGGTGCAGACGAGGAGTAACATGCTTCTTTGTGTTGGTTTGAAGAACAAGA TTTACGCTAGCTGA
AA sequence Show only first row Show all	>Lus10036060 pacid=23141208 polypeptide=Lus10036060 locus=Lus10036060.g ID=Lus10036060.BGIv1.0 annot-version=v1.0 MDFSGDDNSSYMTAATPSSSSRFADSFRSFDPPSTKSNSSPNYNFAVDDFESSTVSARFYDECSYLDVHSDFETCSDTQHLIMLHRENRTAQLKPPPARQ SFGGAGGGETGKRSSTPTRRRSGLHVHRRSLWNDDFDPFTAALKNVREGGETGGKNRGGGNHRRVMSDSPGPGEVKPKPTLNWVRSMPRVRSESPIPSPS PMKSSPQPKGVLYARHTRLVKMDSKKAHDDYEEGMMASCNCHAGSKREMLRSLMVSMKGRGEDEEDGELKKQEAEPPRTKMSRRKRLMRKLSFKSGGHRD VDVSENASDAIGTGKKLVQTRSNMLLCVGLKNKIYAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036060 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	2.4	0.9072
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	2.8	0.9002
AT3G49601			unknown protein		Lus10034691 [exp]	7.7	0.8598
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030645 [exp]	14.5	0.8209
AT2G15220			Plant basic secretory protein ...		Lus10001359 [exp]	15.3	0.8174
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	15.9	0.8410
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	20.2	0.8328
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	20.7	0.7980
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	21.7	0.8136
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	25.7	0.8259

Compare expression of checked genes

Lus10036060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.