Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32560 416 / 1e-144 F-box family protein (.1) AT2G26850 411 / 5e-143 F-box family protein (.1) AT2G41170 339 / 1e-114 F-box family protein (.1) AT3G61060 43 / 0.0002 ATPP2-A13 phloem protein 2-A13 (.1.2) AT3G53000 42 / 0.0007 ATPP2-A15 phloem protein 2-A15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036444 [exp] 414 / 2e-143 AT2G26850 391 / 9e-135 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068100 [exp] 488 / 7e-173 AT2G32560 444 / 1e-155 F-box family protein (.1) Potri.001G273900 [exp] 481 / 8e-170 AT2G26850 440 / 3e-154 F-box family protein (.1) Potri.006G040000 [exp] 398 / 1e-137 AT2G26850 374 / 1e-128 F-box family protein (.1) Potri.016G035900 [exp] 389 / 5e-134 AT2G26850 389 / 2e-134 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10036061 pacid=23141033 polypeptide=Lus10036061 locus=Lus10036061.g ID=Lus10036061.BGIv1.0 annot-version=v1.0 ATGCTACTTTACTTCTTGATAACTTGTTTCTCCTTCATCCTATTCTTAAAATCCCTCCTCCCACTGAAGCCTCTACCACCATGGGCAGCTGAGATAAGAC AGCTCTCAGTTTTCTTGTGGAAAGACTTTAAGAACTTGTACAGCAGCAGCAACACTAGAATGGTTATGATGACAAAAGCAGCAGCAGGGGAAGAAGAAGA GAATAATGGCAATGGTGAAGAAGGGAAGTTGTCAGTGTTGGATTTACCAGAACTGGCCTTGGATTGCATTCTTGAGAGGCTTTCACCAGCTGGGCTATGC AACATGGCGGGTGTTTGCTCCTCTTTGAAGGAAAGGTGTACAAGTGATTATCTTTGGAGAAGACACATGAAGCAGAAATGGGGGAGAGTCATTGGTGATG CTGCTCGTAGAGAGTGGAAATGGTATCAAGCTTCAAGAAAGGATTATGGAAGGTGCAGCAAACCAGGGAGGCCAAAAGGGCCGTTTTTTTCCAGCCTTGT CTCTTCACTAGTTTGGAGTTTTCCTTGGATCAAATTAAACAACCACAACCACAACCTTGATCATCAACAGAGAAGAAGCTCCTCTTTCCATGTTGGTGAT GAAGATTCAGCCATGTCATGGTACCTCGCTCTCGAGAGTGGCAAGTTCTGGTTCCCTGCACAAGTCTACAACCGCGAGAATGGGCATGTTGGGTTCATGT TATCATGTTATGATGCTGATCTTAGTTACGATTCTCATACTGATACCTTTCAAGCCAGATATCCACCACATGGAAGGAGGCCAGTGGCAATAGAGACAGG GGTGAACTGGGAAAGGCTAAGAGCAGCGCCAGTGAATACTTCTCCACACGATCTTCATGTGTCCGATTGCTTGAACCAATTATCCCCTGGTGATCACATT GAGATTCAGTGGAGAAGAAACAAGGAGTTTCCCTATGGTTGGTGGTATGGCGTTGTAGGCCATTTGGAGTCATGTGATGGCAACCACCATTATTGTCGCT GTCTTAATAGCGAGGATGTGGTGTTGGAGTTCCATCAGTATGCACCAGGATCACGTTGGAGGCGGACAACTGTGAACAGAAAGGATCATAGGGAGGAAGG GAATGAGGGTGATGGGTTTTACGGTGGCATCAGAAGGCTTACAGGAAATGACGAAATCTCAAGGTGGAAACGACTTTGGCCTATGGATGTCCTTGAATAG
AA sequence Show only first row Show all	>Lus10036061 pacid=23141033 polypeptide=Lus10036061 locus=Lus10036061.g ID=Lus10036061.BGIv1.0 annot-version=v1.0 MLLYFLITCFSFILFLKSLLPLKPLPPWAAEIRQLSVFLWKDFKNLYSSSNTRMVMMTKAAAGEEEENNGNGEEGKLSVLDLPELALDCILERLSPAGLC NMAGVCSSLKERCTSDYLWRRHMKQKWGRVIGDAARREWKWYQASRKDYGRCSKPGRPKGPFFSSLVSSLVWSFPWIKLNNHNHNLDHQQRRSSSFHVGD EDSAMSWYLALESGKFWFPAQVYNRENGHVGFMLSCYDADLSYDSHTDTFQARYPPHGRRPVAIETGVNWERLRAAPVNTSPHDLHVSDCLNQLSPGDHI EIQWRRNKEFPYGWWYGVVGHLESCDGNHHYCRCLNSEDVVLEFHQYAPGSRWRRTTVNRKDHREEGNEGDGFYGGIRRLTGNDEISRWKRLWPMDVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32560			F-box family protein (.1)		Lus10036061 [exp]	0	1
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	10.4	0.8293
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	12.0	0.7818
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	33.9	0.7781
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	36.5	0.7951
AT3G06145			unknown protein		Lus10034029 [exp]	40.2	0.7684
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	40.6	0.7914
AT3G06145			unknown protein		Lus10004420 [exp]	45.1	0.7524
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	47.8	0.7596
AT5G20120			unknown protein		Lus10019426 [exp]	51.2	0.7797
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10002226 [exp]	55.2	0.7296

Compare expression of checked genes

Lus10036061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.