Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46264 217 / 2e-68 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G36990 153 / 2e-44 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT5G62020 147 / 5e-42 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G11660 147 / 3e-41 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT2G41690 136 / 3e-38 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G17750 139 / 2e-37 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 138 / 3e-37 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 138 / 4e-37 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 137 / 8e-37 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT5G03720 132 / 1e-35 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026819 [exp] 221 / 2e-72 AT1G46264 167 / 2e-51 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10001133 [exp] 201 / 3e-61 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10042646 [exp] 195 / 3e-59 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10008007 [exp] 161 / 1e-46 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 161 / 4e-46 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10019348 [exp] 149 / 5e-43 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10014994 [exp] 145 / 4e-41 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10009351 [exp] 142 / 5e-40 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10011065 [exp] 145 / 7e-40 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G273700 [exp] 223 / 7e-72 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 216 / 5e-69 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 202 / 2e-62 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 198 / 9e-61 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G108100 [exp] 162 / 2e-47 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.007G043800 [exp] 154 / 5e-45 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.012G138900 [exp] 147 / 5e-42 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.016G056500 [exp] 144 / 9e-42 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.017G059600 [exp] 145 / 1e-39 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.015G141100 [exp] 140 / 2e-39 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10036062 pacid=23141084 polypeptide=Lus10036062 locus=Lus10036062.g ID=Lus10036062.BGIv1.0 annot-version=v1.0 ATGCAGAGAAGTTGTAATGAAGAGGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGAGTATAATAATGCAGGGATTGAACAAGGGCGGTGGTGGAGTGGTGG CGCCATTCTTAACCAAGACATACGAGCTGGTGGATGATCCAATGACAGACCACATTGTGTCTTGGGGAAGTAATATGAATGATCCAATGAGCACATTCGT GGTATGGAGACCTCCGGAGTTCGCAAGAGATCTCCTCCCTAACTACTTCAAACACAACAACTTCTCCAGCTTCGTCCGCCAACTCAACACCTACGGATTC AAGAAGGTAGTAGCAGAAAGATGGGAGTTTGGTAACGACTACTTCAGGAAAGGAGCAAAGCAGTTGCTCTCCCATATCCACCGTAGAAAATCACCCCATC ATCACCATCACCATCATCATAACGATCATCATCATCATTATCATAATCATGACTTCATATTTCAGCTTCCACCACCTAATTACATTAACCCTCATCACCA ACCCCATCACATATTCCTCCCACCAGCAGCAGCAGCAGTACATTCGGATGATGATGATGAGATGATGATGTTGAGTACACTTTCGGAGGACAACCAGAGG CTGAAGAAGAGGAACTTGGCTCTGCTCTCTGAGCTCTCCCACATGAAGTCCCTCTACAACGACATCATCTACTTCATCCAAAACCATCTCAAGCCCAACC ACCCATTTCCTCATCATCATCATCATCCCCCTACTACTACTACTGCTACTAATAATAATAATAATAATAACAAGCTCGTGGAACTGCAGGATCTCTCTGA TGATACTAAGGAGGATGACAGGGACGGTGGGGGCTGCTCTGGTGCGGTTAAGCTGTTTGGAGTGTCGCTCTGCGGGAAGAAGAGGCAGCTCCATTCTGAT CATCATTTCACTGCTCTTCCTCCTCCTCTTTCATCCTCCTCTTCCTTATGA
AA sequence Show only first row Show all	>Lus10036062 pacid=23141084 polypeptide=Lus10036062 locus=Lus10036062.g ID=Lus10036062.BGIv1.0 annot-version=v1.0 MQRSCNEEEEEEEEEEEESIIMQGLNKGGGGVVAPFLTKTYELVDDPMTDHIVSWGSNMNDPMSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGF KKVVAERWEFGNDYFRKGAKQLLSHIHRRKSPHHHHHHHHNDHHHHYHNHDFIFQLPPPNYINPHHQPHHIFLPPAAAAVHSDDDDEMMMLSTLSEDNQR LKKRNLALLSELSHMKSLYNDIIYFIQNHLKPNHPFPHHHHHPPTTTTATNNNNNNNKLVELQDLSDDTKEDDRDGGGCSGAVKLFGVSLCGKKRQLHSD HHFTALPPPLSSSSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10036062 [exp]	0	1
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	2.2	0.9729
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	3.5	0.9647
					Lus10005394 [exp]	5.2	0.9694
					Lus10024615 [exp]	5.8	0.9695
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	9.5	0.9596
					Lus10005393 [exp]	10.0	0.9636
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	11.1	0.9308
AT3G19990			unknown protein		Lus10028681 [exp]	12.2	0.9624
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	14.7	0.9445
AT1G06930			unknown protein		Lus10009929 [exp]	15.2	0.9615

Compare expression of checked genes

Lus10036062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.