Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12220 322 / 6e-102 las1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026818 [exp] 989 / 0 AT5G12220 385 / 8e-125 las1-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G273600 [exp] 552 / 0 AT5G12220 399 / 1e-131 las1-like family protein (.1.2) Potri.009G067800 [exp] 544 / 0 AT5G12220 385 / 2e-125 las1-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04031 [flax] [poplar] Las1 Las1-like
Representative CDS sequence Show only first row Show all	>Lus10036063 pacid=23141247 polypeptide=Lus10036063 locus=Lus10036063.g ID=Lus10036063.BGIv1.0 annot-version=v1.0 ATGGAGCACGGAAACATACCTGTCGATTGCATTGTCGATCAAGGGACTACAACGTCGTCGTCACCGTCTGGTTACAGATTGGTGCCCTGGTTGAACTGGG AGGAATGGGAGTGCGTTAGGGATTCTCTTTTCTCTGACTCGCCTCACAAGGTTTCCTTTGCTCTCCATAGAATTTCAACTTGGCGAAGTAGAGGATGTCT ACCTGTGGAGATCGATGTAACTGCTGCAATAATTGAAAGTCAGCTAAAGGATCCTCTATATAGAAAGGACCTTCCGCATGATGCAATCCATTCAGAGCAA ATGCTGGCGATGTTATATTGCATGGCAATCTTGAGGCTGGTGAATTGTGTCATTGAGAAGACACGTAAGAAGAACGAGTCTTCTATTGCTGAGGCTGCAG GTGCAATTGGCATACCACGTTCATTAATTGATATTCGACATGAGGGTTCTCACCGTGATCTCCCTGCTTTACCTTTGGTCCGAGATTCTGCTGCTAAGGC AATTGACTGGTTGAAACAGTACTACTGGGAGCCTCAGGCAGTGCAGATTCCATCTCAAAGGGATGGAGCTAGCATTAGGAAAGAAATAAAATTGAAACTC CGTGAATTAGCTGCATGCTTGAAAGTGAAGCAGAGTCCTCGAACCTGTTCTTCAGTATCTAAGGGGAAAGCAGGTTCCAAGAAGCCAGTTCACAAGAACA TGAAAACCCTGGTTCATTTATATTCTTCCTTCTCTTCGGAAGTGCTTTCTGTGCTACTAGACTTCTTGCTCAAGGCTTTGGATTCTTCAAACTTGGTTTG TCATCCAAAGGAATATGAGATTGGCGAAAAGACTATGTTGGACATTTGGAAGCTTATGATAACAAAATTTTCGAAGAAAGAACCAGAGCTGCTTCTTACA CTTATAAATGCAGTCTTAAATGTGATCGAGAGTCAAGATTCTGTGGACTATATAATAGGGATGCGTCCTGCGTCAACAGAGAACAGCTTGCGGCCCAGTC AAACTGAAGGACTTTGTTCAGTGTTCTTATGGCTTGTAGGACAGCTCAATGGTCTGAAGACTCTCTTTTCCAAAGATGCAAAAGCTGAAACCAAAATCTC CGCTACAGGAATGAGCATGTCAAATGCAATGCTAACTGAAGTCCTACGTAAATGTCTCCTTACGTCGTCTTGTGGTAACAAGCAGCTTATGGATGGGGCA AAGCTTCTTGTTCAGCTTATCGGAAATTTCTCTTTGAAAGAGAAACTCAATAGATTAAGCTCACATTACAAGTCAGAGTCTGCTTTTCCTGAGGATGCCA AGTGTGATAAAAGTCATTATGAAGTTCTGATCCAGCACGAAAAGGCTCTCTTTGAGGCTACAGAGAAGTTAGAGAAGTTACAATGTCGTCGTCGAATTGA GGGCCAAGCTTTGACAATAGCAGATGGCGACGCTGCTGGTTCAGGAAAATGGGTAGTTGCAAAGTCATGGAATCCATGCCCTGTGGGGATGCTGCCAGGT GATGTGGGATCGTCTGGTCGCCTTCCAGTCCTTGACCGCGAAGCAGAAGCTGGCGAGAAGTGCATGGCAGTCCCATTGGTTTTGCCGGAAAAGGACCAGA CGATGGAACTGGAAAACTGCAACGAGATTAAACAAAGTAGCAGTAGTAAGAGAGAAGGAAGCTGTGATATTTATGGAGAAGGTAGGCCAGATGTTAAGAG GATAAGAGAGACAAGTACCAGTACATTGGAGAAGCGCAGTTGGGATGATGGAATGATATTCACAGGGGTGGAAGGGCGGTTGATGTTAGATGGGGTGTGG AAGAGAGTAGGGGAGGAAGAGCTTCTGGGAATGAGGTCTGCTGTTAGAATTTTGATTTGA
AA sequence Show only first row Show all	>Lus10036063 pacid=23141247 polypeptide=Lus10036063 locus=Lus10036063.g ID=Lus10036063.BGIv1.0 annot-version=v1.0 MEHGNIPVDCIVDQGTTTSSSPSGYRLVPWLNWEEWECVRDSLFSDSPHKVSFALHRISTWRSRGCLPVEIDVTAAIIESQLKDPLYRKDLPHDAIHSEQ MLAMLYCMAILRLVNCVIEKTRKKNESSIAEAAGAIGIPRSLIDIRHEGSHRDLPALPLVRDSAAKAIDWLKQYYWEPQAVQIPSQRDGASIRKEIKLKL RELAACLKVKQSPRTCSSVSKGKAGSKKPVHKNMKTLVHLYSSFSSEVLSVLLDFLLKALDSSNLVCHPKEYEIGEKTMLDIWKLMITKFSKKEPELLLT LINAVLNVIESQDSVDYIIGMRPASTENSLRPSQTEGLCSVFLWLVGQLNGLKTLFSKDAKAETKISATGMSMSNAMLTEVLRKCLLTSSCGNKQLMDGA KLLVQLIGNFSLKEKLNRLSSHYKSESAFPEDAKCDKSHYEVLIQHEKALFEATEKLEKLQCRRRIEGQALTIADGDAAGSGKWVVAKSWNPCPVGMLPG DVGSSGRLPVLDREAEAGEKCMAVPLVLPEKDQTMELENCNEIKQSSSSKREGSCDIYGEGRPDVKRIRETSTSTLEKRSWDDGMIFTGVEGRLMLDGVW KRVGEEELLGMRSAVRILI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	0	1
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	1.7	0.9078
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	3.2	0.9075
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	6.5	0.8994
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	6.9	0.8968
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	7.4	0.8887
AT5G17250			Alkaline-phosphatase-like fami...		Lus10005793 [exp]	8.5	0.8784
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10016360 [exp]	9.0	0.8473
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	11.8	0.8959
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	12.4	0.8899
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	14.0	0.8826

Compare expression of checked genes

Lus10036063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.