Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12200 776 / 0 PYD2 pyrimidine 2 (.1) AT4G04955 56 / 4e-08 ATALN allantoinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026817 [exp] 895 / 0 AT5G12200 882 / 0.0 pyrimidine 2 (.1) Lus10025648 [exp] 53 / 3e-07 AT4G04955 716 / 0.0 allantoinase (.1) Lus10018186 [exp] 52 / 6e-07 AT4G04955 648 / 0.0 allantoinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067700 [exp] 807 / 0 AT5G12200 863 / 0.0 pyrimidine 2 (.1) Potri.001G273400 [exp] 787 / 0 AT5G12200 857 / 0.0 pyrimidine 2 (.1) Potri.004G041800 [exp] 64 / 1e-10 AT4G04955 669 / 0.0 allantoinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10036064 pacid=23140988 polypeptide=Lus10036064 locus=Lus10036064.g ID=Lus10036064.BGIv1.0 annot-version=v1.0 ATGAAGACATTCTGCGAAGCTGGAGCTCCTTACGGTTGCGGGATTTCTCCATGGTCGTCGTCGAAGCTGCTGATCAAGGGCGGAACAGTAGTCAATGCTC ATCATCAGGAGGTTGCTGATGTCTATATTGAGGACGGAATCATTGTTGCGGTGCAGCCGAATCTCAAGGTTGGGGACGATGTACATGTGTTGGATGCCAC CGGGAAATTCGTCATGCCAGGTGGAATTGATCCTCACACACACCTTGCTATGGAGTTTATGGGTACGGAGACAGTTGATGACTTTTTCAGCGGTCAAGCT GCTGCATTAGCAGGTGGAACAACCATGCATATTGACTTTGTCATACCAGTCAATGGAAGTTTAACTGCTGGTTTAAGAGCTTATGAGAAAAAGGCGCAGA AGTCCTGCATGGATTATGGTTTCCACATGGCAATTACTAAATGGGATGAAGATGTTTCCAGGGATATGGAAATCATGGTCAAAGAGAAAGGTATCAACTC TTTTAAATTTTTCCTAGCCTACAAGGGATCTCTAATGATTAATGATGAACTTCTATTGGACGGGTTGAAGAGGTGTAAGTCTCTTGGTGCATTAGCCATG GTTCATGCTGAAAATGGAGATGCTGTTTTTGAGGGGCAGAAAAGAATGATAGAACTAGGCATCACGGGTCCAGAGGGACATGCACTTTCGAGACCTCCAG TGTTGGAAGCAGAGGCAACTGCCCGAGCAATTCGCTTAGCCAGTTTCGTCAACACGCCTCTCTATGTCCCTCTTAGATGGAGGTATGTCATGAGCCCTCC AATTAGGGCTCCTGGACATGCAAAGGCCCTGCAAGCTGCACTTTCAACAGGGATTCTTCAACTTGTTGGGACGGATCATTGTACATTTAACTCTACTCAA AAGGCATTTCGAATTGATGATTTCCGCAAAATACCAAATGGTGTTAATGGTATTGAGGAGAGGATGCACTTAGTTTGGGATACTATGGTGGAAACTGGCC AAATATCAGTCACCGACTTCGTCAGAGTAACAAGCACTGAATGTGCCAGGATCTTCAATATTTATCCAAGAAAAGGAGCTATTCTTGCTGGTTCTGATGC AGACATCATTATTCTTAATCCAAATCGCAGTTTTGAGATAAGTGCCAAGTCTCACCACTCCAGAACTGACACTAACGTCTATGAGGGTCAGAGGGGCAAG GGGAAGGTTGAGGTGACAGTTGCTGGAGGAAGAGTAGTTTGGATAAATGATGAACTAAAAGTAATCCCTGGTGGTGGAAGATACGTAGAAATGCCTGCTT TCAACTATCTTTTTAGCGGAAATGACAAAGCAGATAATGCATATCTAGCTTCAGTAAATGCTCCTGTAAAGCGTTCCAAATAA
AA sequence Show only first row Show all	>Lus10036064 pacid=23140988 polypeptide=Lus10036064 locus=Lus10036064.g ID=Lus10036064.BGIv1.0 annot-version=v1.0 MKTFCEAGAPYGCGISPWSSSKLLIKGGTVVNAHHQEVADVYIEDGIIVAVQPNLKVGDDVHVLDATGKFVMPGGIDPHTHLAMEFMGTETVDDFFSGQA AALAGGTTMHIDFVIPVNGSLTAGLRAYEKKAQKSCMDYGFHMAITKWDEDVSRDMEIMVKEKGINSFKFFLAYKGSLMINDELLLDGLKRCKSLGALAM VHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEAEATARAIRLASFVNTPLYVPLRWRYVMSPPIRAPGHAKALQAALSTGILQLVGTDHCTFNSTQ KAFRIDDFRKIPNGVNGIEERMHLVWDTMVETGQISVTDFVRVTSTECARIFNIYPRKGAILAGSDADIIILNPNRSFEISAKSHHSRTDTNVYEGQRGK GKVEVTVAGGRVVWINDELKVIPGGGRYVEMPAFNYLFSGNDKADNAYLASVNAPVKRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	0	1
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	1.4	0.8698
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	2.0	0.8647
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	3.0	0.8264
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	6.6	0.7781
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	6.8	0.7484
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	8.8	0.7451
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	12.0	0.7910
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	13.0	0.7933
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	13.3	0.7195
					Lus10039434 [exp]	13.9	0.7179

Compare expression of checked genes

Lus10036064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.