Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57150 71 / 3e-15 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 68 / 1e-13 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 64 / 2e-12 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G28160 63 / 4e-12 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G01260 63 / 7e-12 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G16430 62 / 2e-11 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 61 / 4e-11 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT2G46510 61 / 5e-11 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G12860 60 / 1e-10 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 59 / 1e-10 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030609 [exp] 139 / 2e-39 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 131 / 2e-36 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016151 [exp] 66 / 7e-13 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10006951 [exp] 64 / 9e-13 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10024871 [exp] 62 / 1e-11 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005966 [exp] 62 / 2e-11 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030243 [exp] 62 / 2e-11 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018787 [exp] 62 / 2e-11 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043199 [exp] 60 / 9e-11 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189600 [exp] 70 / 3e-14 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 70 / 4e-14 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141800 [exp] 67 / 1e-13 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G042000 [exp] 65 / 1e-12 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074900 [exp] 64 / 2e-12 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G221100 [exp] 64 / 3e-12 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074700 [exp] 63 / 3e-12 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 62 / 7e-12 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G041500 [exp] 61 / 9e-12 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141600 [exp] 62 / 1e-11 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036068 pacid=23141149 polypeptide=Lus10036068 locus=Lus10036068.g ID=Lus10036068.BGIv1.0 annot-version=v1.0 ATGGAGCTGTTGCAATTTCAAAGGAATCAACTTGGATTCACTCTGATGCTCAAACCTATACTGAGTTATTCTGCATTATCTGCAAGTGCAGCAACTAGCT CAAGCAAGCCAGTACCCAAGTTGACTGACAGCTCTGTGAACACAAAGGTCGCGAAATCTAACGAGAAACCGACCAGGAAACGTCCCTCGTATAAGAATCT TATCCTGGAGAGGAACAGGAAGAACAAGATTCAACAGCGGCTCTGTGCCCTACGTGCATTGGTCCCCAAGATTTCCAAGATGGACAAAGCATCGATCATC GGAGATGCAGTCCACTACATCATCGACTTACAGAACGAGAGGAAGAGTCTCGAAGAGGAGCTTGACCAGCTTGAAGAACAGGAGGAATACTACTGTGATT ATATGAAACAGGAAACAAGTTTCACCATATGTTTTACACCAGCTTTGATAAATGAGTACAAGAAACAAGTTGTCAGTGTAATGCATGTGGAGATGAGAAA CATACGAGTACACTACGAAACAGGAGGAATACTACTGTAA
AA sequence Show only first row Show all	>Lus10036068 pacid=23141149 polypeptide=Lus10036068 locus=Lus10036068.g ID=Lus10036068.BGIv1.0 annot-version=v1.0 MELLQFQRNQLGFTLMLKPILSYSALSASAATSSSKPVPKLTDSSVNTKVAKSNEKPTRKRPSYKNLILERNRKNKIQQRLCALRALVPKISKMDKASII GDAVHYIIDLQNERKSLEEELDQLEEQEEYYCDYMKQETSFTICFTPALINEYKKQVVSVMHVEMRNIRVHYETGGILL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	0	1
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	6.3	0.8852
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	8.3	0.8002
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	11.9	0.8757
					Lus10026122 [exp]	15.5	0.8591
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030210 [exp]	15.8	0.8397
					Lus10000028 [exp]	17.4	0.8746
					Lus10006075 [exp]	19.2	0.8700
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	23.2	0.8667
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	25.5	0.8018
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	26.6	0.8654

Compare expression of checked genes

Lus10036068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.