Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21300 461 / 4e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 460 / 3e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 454 / 4e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 437 / 1e-140 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 428 / 5e-137 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 426 / 3e-136 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 423 / 3e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 421 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 425 / 5e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22150 403 / 5e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008967 [exp] 476 / 2e-155 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 477 / 2e-151 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 461 / 1e-148 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 460 / 2e-148 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 445 / 3e-143 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 443 / 5e-142 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 440 / 6e-141 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 438 / 7e-139 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 429 / 8e-139 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067000 [exp] 1089 / 0 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 484 / 8e-159 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 476 / 2e-154 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 474 / 2e-153 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 451 / 5e-145 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 452 / 4e-144 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 441 / 5e-142 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 437 / 3e-141 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G111300 [exp] 439 / 4e-141 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 442 / 5e-141 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036071 pacid=23141156 polypeptide=Lus10036071 locus=Lus10036071.g ID=Lus10036071.BGIv1.0 annot-version=v1.0 ATGTTACAATCATCTTCTCGCCTCGCCCTCTGCTACTGTAAAAATTGTGTTCGTGTAGTCTCCTTACCTTCTCAAACGCATCGCCCCAGGACATCCTTCC ACCGTAACACATCTACCGCCGCCGCCGCTCCCTGCGATCTCCTCGCAGCTCTTGTCTCCAATGCCCCGTTTCTTCTCCAAATCCAACAATGTCACGCCTT TGCTCTTCTCAACGGCGTGCTCCCTCGTACAGTATCCCTCTCCGCTTCTCTCATCCTCCGCTACGCCGCTCTTCGAGCCTGCCCCGCTACGTTTCGCCGT CTCTTTGAAGAGACTCTTCCCTTTTCTCGCTCTGCCTTCTTATGGAACACCCTCATCAGGGCTCAGTCGGTGGCCCGGGTGAAAGATGATTTCGGAATTT ATAATCGGATGGTTAGAAGCGGTGTTAGACCGGATGATTACACTTTCCCTTTTGTTCTGAAGGCCTGTGTCGATAATGGGAGTAGTGAGAAGGGTCTGGA AGTTCATGGAGCTTTGTTGAAGTGCGGGTTTGATTGGGATGTGTTTGTTGGAAATACCCTTTTGTTGTTTTATGGTGATTGTGTAAGTATAAGGGACGCC GATAAGGTGTTCGATGAAATGCTGGAAAGAGACGTTGTGTCTTGGAATACCTTGATTGGTGTGTTCTCTGTACGTGGGTTTTATAGGGAGGCCTCCCACG TGTTTCTGAGGATGAATCTGACGTCGGGGCTTACGCCCAATATCTCCACGATTGTTACTGTTTTGCCTGCTTGTGCTGGACTTGAAGATGTGAGGATGGC TACTCAAATTCATTGTTTTACTCTCAAGGTTGGACTGGATTCTCATGTGACTGTAGGAAACGCTCTGATAGATGTTTATGGGAAATGTGGGGAATCCAAG TTTTCCAAGAGAGTTTTTGATGAAATGGTCGGCAAGAATGAGGTTTCCTGGAATGCTATCATTACAGGTCTTACTTATTCTGGTCATAGTAATTATGCAT TGGAGATGTTTATATCGATGATTGAAAGCCATGTGAAGCCAAATTCGGTCACCATCTCTAGTATAATGCCAGTTTTGATTGAATTTGGTCATTTCCGTAT TGGGACAGAAGTTCATGGGTTTAGTTTAAGAAATGGTATCGAGTCAGATATTTTTGTTTCGAACTCATTGATTGATATGTATGCAAAATCAGGCCATGCA ACTGAAGCTTCCAATGTATTCAACCATATGCATGAAAAGAACGTTGTTTCTTGGAATGCAATGATTGGAAATTTAGCTCAGAACAGGCTGCAGTTGGCTG CGATAGAGTTGTTGAGACAAATGCAGTTTGCAGGAGAAATTGGCAATTCAGTTACTTTCACAAATGTTCTCCCTGCTTGTGGAAGATTGAGATTTCTTGA TGCTGGCAAAGAGATCCATGCAAGGACCATTCGCCTGGGATGCTACTTTGATCTGTTTGTATCCAATGCTTTGACGGACATGTATGCTAAATGTGGTTGC TTACATCTTGCTCAAAATGTATTTGAAACCAGTCTTAGAGATGATGTATCGTATAACATCCTAATCACAGGACATTCCCAAACTAGTGAGTGCTCGAAAT CACTTGATTTGTTCAAGGAGATGGGCCATGTGGGGTTGCAACACGATGTAGTCTCTTACGTAGGTGCTATTTCAGCTTGTGCGAATCTACCGGCACTAAA GCTTGGGAAAGAGATACATGGATTACTTTTCAGGCACCATATGAACGGACATCTCTTCATCTGTAATGCTCTGCTGGACTTTTATACCAAATGTGGAAAG ATTGATGTTGCAGAGAAGGTTTTCTGTAGAATGTCAAACAGAGATGCAGCTTCCTGGAATACTATGATCCAAGGATGTGGAATGCTTGGTGACTTGGATA TGGCGTTTGATCTCTTCAGTGCAATGAAAGAAGATGGAGTGCCATATGATTCTGTCTCATACATTGCCGTTTTGTCAGCTTGTAGTCATGGTGGTCTGGT CAGCAAAGGGAAGAAATACTTCGATGAAATGCTGGCTATGGACATCAAACCAACACAAATGCACTATGCTTGTATGGTAGATCTTCTTGGCCGTGCTGGA CTACTTGATGAAGCGGTAAAGTTTATCAAACGATTGCAAGATGAACCAGATGCAAACGTATGGGGTTCTTTGCTTGGTGCATGCCGCCTCCACGGAAATG TGGAATTAGCCTGCTGGGCAGCTGACCACTTGTTCAAGCTAAAGCCACAACACTCTGGATACTACACAATGCTCTCAAACATATACGCAGAAGCAGGCAA ATGGGAGGAGGCAGATTTGGTAAGGAAACTGATGAAAGTGAAGGGTGCAACTAAAAATCCTGGCTGCAGTTGGGTTCACATCAATGACCAGGTTCATGCC TTCATAGCGGGAGACAGACTACAACAAGTTGACTCATACAATTGGGGCGCTGAGGCTTGA
AA sequence Show only first row Show all	>Lus10036071 pacid=23141156 polypeptide=Lus10036071 locus=Lus10036071.g ID=Lus10036071.BGIv1.0 annot-version=v1.0 MLQSSSRLALCYCKNCVRVVSLPSQTHRPRTSFHRNTSTAAAAPCDLLAALVSNAPFLLQIQQCHAFALLNGVLPRTVSLSASLILRYAALRACPATFRR LFEETLPFSRSAFLWNTLIRAQSVARVKDDFGIYNRMVRSGVRPDDYTFPFVLKACVDNGSSEKGLEVHGALLKCGFDWDVFVGNTLLLFYGDCVSIRDA DKVFDEMLERDVVSWNTLIGVFSVRGFYREASHVFLRMNLTSGLTPNISTIVTVLPACAGLEDVRMATQIHCFTLKVGLDSHVTVGNALIDVYGKCGESK FSKRVFDEMVGKNEVSWNAIITGLTYSGHSNYALEMFISMIESHVKPNSVTISSIMPVLIEFGHFRIGTEVHGFSLRNGIESDIFVSNSLIDMYAKSGHA TEASNVFNHMHEKNVVSWNAMIGNLAQNRLQLAAIELLRQMQFAGEIGNSVTFTNVLPACGRLRFLDAGKEIHARTIRLGCYFDLFVSNALTDMYAKCGC LHLAQNVFETSLRDDVSYNILITGHSQTSECSKSLDLFKEMGHVGLQHDVVSYVGAISACANLPALKLGKEIHGLLFRHHMNGHLFICNALLDFYTKCGK IDVAEKVFCRMSNRDAASWNTMIQGCGMLGDLDMAFDLFSAMKEDGVPYDSVSYIAVLSACSHGGLVSKGKKYFDEMLAMDIKPTQMHYACMVDLLGRAG LLDEAVKFIKRLQDEPDANVWGSLLGACRLHGNVELACWAADHLFKLKPQHSGYYTMLSNIYAEAGKWEEADLVRKLMKVKGATKNPGCSWVHINDQVHA FIAGDRLQQVDSYNWGAEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	0	1
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	1.7	0.8617
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	2.0	0.8586
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	2.6	0.8283
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	3.2	0.8743
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	5.7	0.8629
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	8.2	0.8054
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	8.4	0.8521
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	13.9	0.8514
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	15.1	0.7667
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	17.9	0.8085

Compare expression of checked genes

Lus10036071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.