Plant FIBer expression Database

Lus10036072 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12260 568 / 0 unknown protein
AT5G60700 108 / 1e-24 glycosyltransferase family protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041317
[exp]
112 / 2e-25 AT5G60700 1204 / 0.0 glycosyltransferase family protein 2 (.1)
Lus10037396
[exp]
112 / 2e-25 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G066900
[exp]
726 / 0 AT5G12260 669 / 0.0 unknown protein
Potri.001G272400
[exp]
723 / 0 AT5G12260 665 / 0.0 unknown protein
Potri.012G121826
[exp]
180 / 4e-53 AT5G12260 156 / 9e-45 unknown protein
Potri.004G212000
[exp]
115 / 2e-26 AT5G60700 1167 / 0.0 glycosyltransferase family protein 2 (.1)
Potri.009G010900
[exp]
112 / 1e-25 AT5G60700 1170 / 0.0 glycosyltransferase family protein 2 (.1)
Potri.012G123450
[exp]
97 / 2e-24 AT5G12260 97 / 2e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10036072 pacid=23141150 polypeptide=Lus10036072 locus=Lus10036072.g ID=Lus10036072.BGIv1.0 annot-version=v1.0
ATGCCCAAAATGGTGGGCCCTCCAAAGAAGCACTTCCTCCTTCTCCTCCTTCTCTCCCTCTTCGCTCTCTCCTTCTTCCTCTTCTCCCACTCTCCCTCTT
CCACTCCAGATTTCTCCATTCCAATCAGCCCTTCAAACAAAAACCTCAGTCCCCAGCTCACTTCTAGCTTCACCTTCCTCATCAAAGTACTCGCTTTCAA
TCGCCTCCAGTCTGCCTCCCGCTGTCTCCGCTCCCTCGCAGCCGCGGATTACGCCGGAGACACGGTGCATCTCTACGTCTACGTCGACCATTTCGCTGCG
GGAAACGATTCAGCCGATGTTCTGGATCGGAAGCTCGAGGAATCGCGTCGGATTTTGGAATTCGTAGATGGATTCGCTTGGAAATTTGGGGAAAAGGTCG
TGCATTACCGGACGGGAAATGTTGGTCTACAGGCGCAGTGGTTGGAGGCTTGGTGGCCGAACTCCGACGACGAGTTCGCTTTCATTGTTGAGGATGATTT
GGAGGTTTCCCCGTTGTTCTATAAGTTCGTGAGAGCTGTTATTCTCAATTACCGTTACAATGCCTCCAATTTCAGCCCTTCCATTTTTGGCGTGACCCTC
CAGCGACCAAGGTTTGTTCCAGGTAAACATGGGAATAAGATAGAATTGGATAAGGGAACTCGGATTTTCCTGTACCAGCTAGTTGGGACTTGGGGACAGA
TTCTATTTCCAAAGCCTTGGAAAGAGTTCAGGTTATGGTATGATGACCACAAGGTGAAGGGGGTCAAACCATTTCTTGATGGCATGGTGACGAATGGATG
GTACAAAAAGATGGGCGAGAGAATCTGGACTCCTTGGTTTATCAAGTTTGTACACTCCAGAGGCTATTTCAATATCTACACCAATTTTCAACATGAGAGA
GCACTCAGTGTCTCTCACAGGGATACGGGTGTCAACTATGGGAAATCTGCTGGTCCAGACTCTCAACTGGTGGATGAAACTTCACTTGACTTCAACTTGC
TAGAACTCCAGCCTTTGAGTAACTTGAAATGGTACGATTTCTGTTTTCGCGAAGTTCTGCCTGGAAGAATCATCAGGAATTTAGATGAATTTGTGCCTGT
TTCCCGATATGTCCAGAAACTACACACAGTTATGATGGTGAGCATTATAGGAGCATCAGATGCAATAGTAAGAAACCTGATATGCCATTTTGAGAGGCTA
AATGTGCGTAACTACATCCTGGTGGGTCATGCATCTGAGTTGTTATTTGACCTTGCTAGAAGAGGGCATCCCGTCATTGTTGCTGATGAGCTTGGCAAGA
ATCTGAGAGACCATAAACTGGTAAGTTCTCAAGATTCATCTGAAATCATCCTGCTCAAGGCATATCTGATGGAGAAGTGTATAGAACATGGGCTAAATGC
TTGGATAGTGGATGCAAACGTGCTTTTTGTCAATAATGAACTATTAGAGGAGCTTGCGGATCCGACAAACCATTTTTATGGCAGCAAAACCGTCGAAATT
TTCTTTGCTAGAAGCTCTTCATCTGTTAAGAAGGTTGTGGGTGAAGGCTTCCTGAAAAAGGTCACCTCCATGATCAATGAAGCATCGTCAGAGAACAGAA
ACATTGCACAAGTATTGAGTAAGTTGTTAGAACAGAACAGTATACCGGGCAGAAGGGTTGATGATACTGAAGTGGGGATGGAGATTGATGATAGAATAAG
TGTCGACAATCAAGCCCTATCTGGGAAGAAGGTGGTATATTGGTCCAAACAGATGACTTCAAATTCGATACAGAAACGACTGGAAGAACTGAGCATGTGG
GTGTTGGATGGAGACTCTTCTTGCAAAGCTGTCGTTTGCCACAAAGAATCATAA
AA sequence
>Lus10036072 pacid=23141150 polypeptide=Lus10036072 locus=Lus10036072.g ID=Lus10036072.BGIv1.0 annot-version=v1.0
MPKMVGPPKKHFLLLLLLSLFALSFFLFSHSPSSTPDFSIPISPSNKNLSPQLTSSFTFLIKVLAFNRLQSASRCLRSLAAADYAGDTVHLYVYVDHFAA
GNDSADVLDRKLEESRRILEFVDGFAWKFGEKVVHYRTGNVGLQAQWLEAWWPNSDDEFAFIVEDDLEVSPLFYKFVRAVILNYRYNASNFSPSIFGVTL
QRPRFVPGKHGNKIELDKGTRIFLYQLVGTWGQILFPKPWKEFRLWYDDHKVKGVKPFLDGMVTNGWYKKMGERIWTPWFIKFVHSRGYFNIYTNFQHER
ALSVSHRDTGVNYGKSAGPDSQLVDETSLDFNLLELQPLSNLKWYDFCFREVLPGRIIRNLDEFVPVSRYVQKLHTVMMVSIIGASDAIVRNLICHFERL
NVRNYILVGHASELLFDLARRGHPVIVADELGKNLRDHKLVSSQDSSEIILLKAYLMEKCIEHGLNAWIVDANVLFVNNELLEELADPTNHFYGSKTVEI
FFARSSSSVKKVVGEGFLKKVTSMINEASSENRNIAQVLSKLLEQNSIPGRRVDDTEVGMEIDDRISVDNQALSGKKVVYWSKQMTSNSIQKRLEELSMW
VLDGDSSCKAVVCHKES

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12260 unknown protein Lus10036072
[exp]
0 1
AT3G22960 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, ... Lus10039396
[exp]
3.7 0.8960
AT5G60790 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL C... Lus10038681
[exp]
4.6 0.8688
AT2G37230 Tetratricopeptide repeat (TPR)... Lus10034721
[exp]
7.4 0.8996
AT2G45440 DHDPS2 dihydrodipicolinate synthase (... Lus10009302
[exp]
12.5 0.8920
AT4G24175 unknown protein Lus10017264
[exp]
15.9 0.8867
AT5G10920 L-Aspartase-like family protei... Lus10032846
[exp]
22.7 0.8925
AT1G23170 Protein of unknown function DU... Lus10034590
[exp]
22.8 0.7965
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Lus10015204
[exp]
28.0 0.8889
AT3G57610 ADSS, ATPURA adenylosuccinate synthase (.1) Lus10040512
[exp]
29.7 0.8722
AT1G05670 Pentatricopeptide repeat (PPR-... Lus10026465
[exp]
30.5 0.8457

Lus10036072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.