Plant FIBer expression Database

Lus10036073 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26770 733 / 0 SCAB1 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
AT2G40820 490 / 9e-171 unknown protein
AT3G56480 483 / 4e-168 myosin heavy chain-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026809
[exp]
890 / 0 AT2G26770 745 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Lus10027293
[exp]
498 / 8e-174 AT2G40820 614 / 0.0 unknown protein
Lus10038998
[exp]
495 / 1e-172 AT2G40820 611 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G066800
[exp]
766 / 0 AT2G26770 785 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Potri.001G272300
[exp]
751 / 0 AT2G26770 773 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Potri.016G033100
[exp]
558 / 0 AT2G40820 687 / 0.0 unknown protein
Potri.006G035300
[exp]
555 / 0 AT2G40820 681 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10036073 pacid=23141224 polypeptide=Lus10036073 locus=Lus10036073.g ID=Lus10036073.BGIv1.0 annot-version=v1.0
ATGACGAGGGTCGGCCGGGATTACAGAGATACGATGCCGAAAGATGCAGTTCCTGCTGTATCTGCGGATGTAATGTTTGCTTCCAGTCGATTCCCAAACT
ATAAGATGGGGGCCAACAACCAGATCATTGACCTCAAAGATGACCTTAAACTCAAGTCCATGAAAGAAGTTGTCGCCAAGGAGACTGCTCAGCTCTTGGA
TCAGCAGAATCGTCTCTCCGTTCGCGATCTTGCTAATAAATTTGAAAAGGGCTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACTCAGGGAGGCA
GCTTCTTTGGAGAAACATGTGCTTTTGAAGAAACTTAGAGATGCATTGGAGGCCTTGAGAGGGCGTGTAGCAGGCAGAAACAAGGATGATGTGGAGGAAG
CTATTGCGATGGTGGAGGCTCTAGCTGTTCAGCTAACAGAAAGGGAGGGAGAGTTGATTCAAGAAAAGGCTGAAGTAAAGAAATTAGCTAGTTTCCTTAA
GCAGGCTTCAGAAGATGCCAAGAGGCTTGTAGATGAGGAAAGAGCTTTTGCTCGAGCAGAAATAGACAGTGCTAGGGCTGCGGTGCAGAGGGTTGAACAA
GCCCTTCAAGAACATGAACGAACATCTGGAGCTTCAGGGAAGCAGGACTTGGAAGAATTGATGAAGGAAGTTCAAGAGGCTAGAAGAATCAAAATGTTGC
ATCAGCCTAGTAAGGTTATGGACATGGAACATGAGTTACGAGCATTGAGAACTCAGCTAGCCGAGAAGACCAAACGTGCACTTCAGCTTCAAAAAGAGCT
TGCAACTACTAGGAGTGGGGCGCAGAATCCGTCACACTTGTATGAATTGGAGGGCACTGAAGCTTTAGGCTCGTATCTAAGGATCAATTGTTGCTCTGAC
AACGCTCCAGAACTTACTAATTGCTCATTCCAGTGGTATCGTGTATCATCTGAAGGTGGCAAGAAGGAACTGATATCAGGTGCTACAAAATCTACATATG
CTCCAGAGCCTTCTGATGTTGGGCGAGTACTGCAAGCTGAATTTATTCTTGGTGACCGGAGAATCACTTTGACTACAACTGGCCCAATTGATCCTGCTCC
TGGTCTGGGAAGCTATGTGGAGGCACTTGTCCGTAAGCACGACGTTGAGTTCAAGGTGGTTGTTACCCAATTAAACGGCTCAGACCATCCTTCAGAGACC
ATCCACATCTTCCACGTAGGAAAGATGAGGATAAAGCTTTGTAAAGGATCTTCCACAATTGCTAAAGAATACTACTGTGCTTCCATGCAGCTGTGTGGAG
TTAGAGGAGCTGGAAATGCAGCAGCTCAGGCATTGTTTTGGCAAGCAAACAAAGAAGTATCATTTGTTCTAGCTTTCGAATCAGAGAGAGATAGAAATGC
AGCAATAATGCTAGCCAAACGGTTTGCTTTCGACTGCAATATCGTGCTTGGTGGTCCTGATGAAAGAGCTACTCTCGTCACGTAA
AA sequence
>Lus10036073 pacid=23141224 polypeptide=Lus10036073 locus=Lus10036073.g ID=Lus10036073.BGIv1.0 annot-version=v1.0
MTRVGRDYRDTMPKDAVPAVSADVMFASSRFPNYKMGANNQIIDLKDDLKLKSMKEVVAKETAQLLDQQNRLSVRDLANKFEKGLAAAAKLSEEARLREA
ASLEKHVLLKKLRDALEALRGRVAGRNKDDVEEAIAMVEALAVQLTEREGELIQEKAEVKKLASFLKQASEDAKRLVDEERAFARAEIDSARAAVQRVEQ
ALQEHERTSGASGKQDLEELMKEVQEARRIKMLHQPSKVMDMEHELRALRTQLAEKTKRALQLQKELATTRSGAQNPSHLYELEGTEALGSYLRINCCSD
NAPELTNCSFQWYRVSSEGGKKELISGATKSTYAPEPSDVGRVLQAEFILGDRRITLTTTGPIDPAPGLGSYVEALVRKHDVEFKVVVTQLNGSDHPSET
IHIFHVGKMRIKLCKGSSTIAKEYYCASMQLCGVRGAGNAAAQALFWQANKEVSFVLAFESERDRNAAIMLAKRFAFDCNIVLGGPDERATLVT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26770 SCAB1 stomatal closure-related actin... Lus10036073
[exp]
0 1
AT2G32980 unknown protein Lus10035310
[exp]
2.4 0.6772
AT1G03150 Acyl-CoA N-acyltransferases (N... Lus10022048
[exp]
17.0 0.6755
AT5G65670 AUX_IAA IAA9 indole-3-acetic acid inducible... Lus10019241
[exp]
24.7 0.6741
AT3G26750 unknown protein Lus10021459
[exp]
26.3 0.6443
AT1G19050 ARR7 response regulator 7 (.1) Lus10036642
[exp]
35.5 0.5984
AT1G48050 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMO... Lus10009294
[exp]
36.2 0.6537
AT1G68810 bHLH bHLH030 basic helix-loop-helix (bHLH) ... Lus10035056
[exp]
38.4 0.5945
AT1G09840 AtHIR1, ATSK41 hypersensitive induced reactio... Lus10037349
[exp]
45.3 0.6047
AT1G25580 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION ... Lus10021708
[exp]
60.7 0.6340
AT1G17400 unknown protein Lus10027660
[exp]
61.5 0.5765

Lus10036073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.